View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_35 (Length: 280)
Name: NF18021_low_35
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_35 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 38187789 - 38187509
Alignment:
| Q |
1 |
tctatttacaaattgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaac |
100 |
Q |
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| T |
38187789 |
tctattttcaaattgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaac |
38187690 |
T |
|
| Q |
101 |
attgttaattgtggggatcaagttggatgggagaggaatatagatgtcattgcatcaaatctctc-atccatggaatattctttcaattgtacttatcca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38187689 |
attgttaattgtggggatcaagttggatgggagaggattatagatgtcattgcatcaaatctctcaatccatggaatattctttcaattgtacttatcca |
38187590 |
T |
|
| Q |
200 |
atacatataatgaagattgaggctcatatgttatctaagtttagctacagaggtggaaaaatttctagctacataggtggt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38187589 |
atacatataatgaagattgaggctcatatgttatctaagtttagctacagaggtggtaaaatttctagctacataggtggt |
38187509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 38157640 - 38157396
Alignment:
| Q |
9 |
caaattgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaacattgttaa |
108 |
Q |
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||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||| |
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| T |
38157640 |
caaattgcaaccatcttgtagacttcacccttgatcattgtgatttcaagtctgacttaaaaatagtcagttcaacattgtttcatttgaacattgttaa |
38157541 |
T |
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| Q |
109 |
ttgtggggatcaagttggatgggagaggaatatagatgtcattgcatcaaatctctcatccatggaatattctttcaattgtacttatccaatacatata |
208 |
Q |
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| T |
38157540 |
ttgtgggattcaaattgggagagtgaggagtatagatatcattgcatcaaatctctcatccattgaatattctttcaattctagttatccaatacacaaa |
38157441 |
T |
|
| Q |
209 |
atgaagattgaggctcatatgttatctaagtttagctacagaggt |
253 |
Q |
| |
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||||| ||| ||||||| |||||||| |||||||| || |||||| |
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| T |
38157440 |
atgaacattcaggctcaaatgttatccaagtttagatatagaggt |
38157396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 38149896 - 38149619
Alignment:
| Q |
9 |
caaattgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaacattgttaa |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||| || |||||||||||||| | ||||||||||||||||||| ||||||||||||| |
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| T |
38149896 |
caaattgcattcatcttgtaaacttcacccttgatcagtgtgatttgaactctgacttaaaaatcaccagtccaacattgtttcatttgaacattgttaa |
38149797 |
T |
|
| Q |
109 |
ttgtggggatcaagttggatgggagaggaatatagatgtcattgcatcaaatctctcatccatggaatattctttcaattgtacttatcca------ata |
202 |
Q |
| |
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||||| |||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||| |
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| T |
38149796 |
ctgtggagatcaacttgggagggtgaggaatatagatatcattgcatcaaatctctcatccatcgaatattctttcaattctagttatccactacacata |
38149697 |
T |
|
| Q |
203 |
catataatgaagattgaggctcatatgttatctaagtttagctacagaggtggaaaaatttctagctacataggtggt |
280 |
Q |
| |
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|| || ||||| ||| ||||||| || |||| ||||||||||||||| || | ||||||||| ||||| ||||||| |
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| T |
38149696 |
cacatgatgaacattcaggctcaaatcctatccaagtttagctacagaagtagtcaaatttctacctacagaggtggt |
38149619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 38173111 - 38172863
Alignment:
| Q |
14 |
tgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaacattgttaattgtg |
113 |
Q |
| |
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||||||||||||||||||||||||||| |||| ||||| ||||| |||||||| |||||||| ||||| | |||||| || | ||||| ||||| || | |
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| T |
38173111 |
tgcattcatcttgtagacttcacccttaatgattgtgagttcaattctgacttgaaaataattagtccgaagttgtttaatttaaacatcgttaactgcg |
38173012 |
T |
|
| Q |
114 |
gggatcaagttggatgggagaggaatatagatgtcattgcatcaaatctctcatccatggaatattctttcaattgtacttatccaatacatataatgaa |
213 |
Q |
| |
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||| | || |||| |||||| |||||| ||| || ||||||||||||| ||||| || |||||||||| ||| || | | | |||| |||||| |
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| T |
38173011 |
gggttgaaattgggagggagaagaatatcgatatctttgcatcaaatctgtcatcaattgaatattcttgtaatggtcgtga---agtacactcaatgaa |
38172915 |
T |
|
| Q |
214 |
gattgaggctcatatgttatctaagtttagctacagaggtggaaaaatttct |
265 |
Q |
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||| ||||| |||||||||| |||||||||||||||||| || |||||||| |
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| T |
38172914 |
cattaaggctgatatgttatccaagtttagctacagaggtagagaaatttct |
38172863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 38286153 - 38285925
Alignment:
| Q |
14 |
tgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaacattgttaattgtg |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || | ||||| |||||||||||||||| ||| ||||||||||| || ||||||||||||||||| |
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| T |
38286153 |
tgcattcatcttctagacttcacccttgatgactgcaagttcaagtctgacttaaaaataaccagcccaacattgttaaatttgaacattgttaattgtc |
38286054 |
T |
|
| Q |
114 |
gggatcaagt-tggatgggagaggaatatagatgtcattgcatcaaatctctcatccatggaatattctttcaattgtacttatccaatacatataatga |
212 |
Q |
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||| | || | || | | ||||| ||| ||| ||||||||||||||||||||||| | |||||||||| | | ||||| | | |||| | ||||| |
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| T |
38286053 |
gggttaaaatccagaagag-gaggagtatcgatatcattgcatcaaatctctcatcccttgaatattcttgtactggtactga---agtacacacaatga |
38285958 |
T |
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| Q |
213 |
agattgaggctcatatgttatctaagtttagct |
245 |
Q |
| |
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| || |||||||||||||||| |||||||||| |
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| T |
38285957 |
acatcaaggctcatatgttatccaagtttagct |
38285925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 42796888 - 42796993
Alignment:
| Q |
11 |
aattgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaacattgttaatt |
110 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| ||| | |||| ||| || | | ||||| ||||||||||||| ||| | ||||||| ||||| | |
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| T |
42796888 |
aattgcagccatcttgcagacttcacccttgatgattgtcagttcacttctaacgtgataataaacagtccaacattgcttcgtttgaacatcgttaact |
42796987 |
T |
|
| Q |
111 |
gtgggg |
116 |
Q |
| |
|
|||||| |
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| T |
42796988 |
gtgggg |
42796993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 36744818 - 36744773
Alignment:
| Q |
11 |
aattgcattcatcttgtagacttcacccttgatgagtgtgatttca |
56 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||| ||| |||||| |
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| T |
36744818 |
aattgcagtcatcttttagacttcacccttgatgattgtcatttca |
36744773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 12409622 - 12409468
Alignment:
| Q |
14 |
tgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaacattgttaattgtg |
113 |
Q |
| |
|
||||| |||||| ||||||||||||||||| || | ||||| |||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |
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| T |
12409622 |
tgcatccatcttctagacttcacccttgatacctgcaagttcaagtctgacttaaaaataatcagtccaacattgtttcatttcaacattcttaattgtg |
12409523 |
T |
|
| Q |
114 |
gggatcaagttggatggga-gaggaatatagatgtcattgcatcaaatctctcatc |
168 |
Q |
| |
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||| | || || || || ||||||||| ||| |||||||||||||||||||||| |
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|
| T |
12409522 |
ggg-ttaaactgcttgagaggaggaatatcgatatcattgcatcaaatctctcatc |
12409468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 12421682 - 12421528
Alignment:
| Q |
14 |
tgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaacattgttaattgtg |
113 |
Q |
| |
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||||| |||||| ||||||||||||||||| || | ||||| |||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |
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| T |
12421682 |
tgcatccatcttctagacttcacccttgatacctgcaagttcaagtctgacttaaaaataatcagtccaacattgtttcatttcaacattcttaattgtg |
12421583 |
T |
|
| Q |
114 |
gggatcaagttggatggga-gaggaatatagatgtcattgcatcaaatctctcatc |
168 |
Q |
| |
|
||| | || || || || ||||||||| ||| |||||||||||||||||||||| |
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|
| T |
12421582 |
ggg-ttaaactgcttgagaggaggaatatcgatatcattgcatcaaatctctcatc |
12421528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 2223559 - 2223391
Alignment:
| Q |
14 |
tgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaacattgttaattgtg |
113 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| || | ||||| |||||||||||||||| ||| ||||||||||| || | |||||||||||||| | |
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| T |
2223559 |
tgcatccatcttctagacttcacccttgatgactgcaagttcaagtctgacttaaaaataaccagcccaacattgttaaatttcaacattgttaattgcg |
2223460 |
T |
|
| Q |
114 |
gggatcaagt-tggatgggagaggaatatagatgtcattgcatcaaatctctcatccatggaatattctt |
182 |
Q |
| |
|
||| | || | || | | ||||||||| ||| ||||||||||||||||||||||| | |||||||||| |
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|
| T |
2223459 |
gggttaaaatcaagaagag-gaggaatatcgatatcattgcatcaaatctctcatcctttgaatattctt |
2223391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 4164128 - 4164027
Alignment:
| Q |
14 |
tgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaacattgttaattgtg |
113 |
Q |
| |
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||||| |||||||||||||||||||||||| | ||| | |||| |||||| || |||||| |||| |||||||||||||| ||||||||||||| |||| |
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| T |
4164128 |
tgcatccatcttgtagacttcacccttgataactgtaacttcatctctgacatacaaataaccagttcaacattgtttcatttgaacattgttaactgtg |
4164029 |
T |
|
| Q |
114 |
gg |
115 |
Q |
| |
|
|| |
|
|
| T |
4164028 |
gg |
4164027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 4225749 - 4225648
Alignment:
| Q |
14 |
tgcattcatcttgtagacttcacccttgatgagtgtgatttcaaatctgacttaaaaataatcagtccaacattgtttcatctgaacattgttaattgtg |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||| | ||| | |||| |||||| || |||||| |||| |||||||||||||| ||||||||||||| |||| |
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|
| T |
4225749 |
tgcatccatcttgtagacttcacccttgataactgtaacttcatctctgacatacaaataaccagttcaacattgtttcatttgaacattgttaactgtg |
4225650 |
T |
|
| Q |
114 |
gg |
115 |
Q |
| |
|
|| |
|
|
| T |
4225649 |
gg |
4225648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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