View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_42 (Length: 235)
Name: NF18021_low_42
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 21733255 - 21733053
Alignment:
| Q |
13 |
aatatgcaatagaagagaagaaactcactgctagaagagctaattaggagagacaaaaagaaaaggatcaaaagagaaagcttcattataaattcgtttg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21733255 |
aatatgcaatagaagagaagaaactcactgctagaagagctaattaggagagacaaaaagaaaaggatcaaaagagaaagcttcattataaactcgttt- |
21733157 |
T |
|
| Q |
113 |
nnnnnnnnncttctcactcactgttcttttttatatgtcttttagttttgtatctccctcactatttataagcaagtaatagtatagcagtataatacaa |
212 |
Q |
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|| ||||||| | |||| || ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21733156 |
--ttttttttttttcactcaaagatcttcttggtattgcttttagtgttgtatctccctcactatttataagcaagtaatagtatagcagtataacacaa |
21733059 |
T |
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| Q |
213 |
tttatc |
218 |
Q |
| |
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|||||| |
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| T |
21733058 |
tttatc |
21733053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 21741756 - 21741554
Alignment:
| Q |
13 |
aatatgcaatagaagagaagaaactcactgctagaagagctaattaggagagacaaaaagaaaaggatcaaaagagaaagcttcattataaattcgtttg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
21741756 |
aatatgcaatagaagagaagaaactcactgctagaagagctaatgaggagagacaaaaagaaaaggatcaaaagagaaagcttcattataaactcgttgg |
21741657 |
T |
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| Q |
113 |
nnnnnnnnncttctcactcactgttcttttttatatgtcttttagttttgtatctccctcactatttataagcaagtaatagtatagcagtataatacaa |
212 |
Q |
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| T |
21741656 |
ttttttt---ttttcactcaaagatcttcttggtattgcttttagtgttgtatctccctcactatttataagcaagtaatagtatagcagtataatacaa |
21741560 |
T |
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| Q |
213 |
tttatc |
218 |
Q |
| |
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|||||| |
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| T |
21741559 |
tttatc |
21741554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 21748763 - 21748683
Alignment:
| Q |
18 |
gcaatagaagagaagaaactcactgctagaagagctaattaggagagacaaaaagaaaaggatcaaaagagaaagcttcat |
98 |
Q |
| |
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|||||||||||||||| ||||||||| || ||||||| |||||||||| |||||||| |||||||||||| |||||||| |
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| T |
21748763 |
gcaatagaagagaagatactcactgcacgatgagctaaccaggagagacacaaagaaaatgatcaaaagagatagcttcat |
21748683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 30148053 - 30148119
Alignment:
| Q |
38 |
cactgctagaagagctaattaggagagacaaaaagaaaaggatcaaaagagaaagcttcattataaa |
104 |
Q |
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||||||| || |||||||||||| |||||| | |||||| |||||||| |||||||||||||||||| |
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| T |
30148053 |
cactgcttgatgagctaattaggggagacacagagaaaatgatcaaaatagaaagcttcattataaa |
30148119 |
T |
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