View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18021_low_5 (Length: 574)
Name: NF18021_low_5
Description: NF18021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18021_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Original strand, 2716137 - 2716683
Alignment:
| Q |
8 |
agaagcaaaggatatctatatctgtaaattcatttatgaagtggtagaaagaaattttaaacaccaatatcctgttgaagaacttttgtgactgatggga |
107 |
Q |
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| T |
2716137 |
agaagcaaaagatatctatatatgtaaattcatt-atgaagtggtaaaaagaaattttaaacaccattatcctgttgaagaacttttgtgactgatggga |
2716235 |
T |
|
| Q |
108 |
attaaaatttaataaaatgtcaacagaaatactcagaaattccttaatccatgttttgagtctaatgtagtnnnnnnnnncacccaaacatggacacaaa |
207 |
Q |
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| T |
2716236 |
attaaaatttaataaaatgtcaacagaaatattcagaaattccttaatccatgctttgagtctaatgtagtaaaaaaaaa-acacaaacatgaacacaaa |
2716334 |
T |
|
| Q |
208 |
actgaactggcacgtaaacatctataataatttnnnnnnncataaaggagtgaatataaacatttgtatcgatgttatgtgtgtctgacacatgttggac |
307 |
Q |
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| T |
2716335 |
actgaactgacacgtaaacatctataataatttaagaaaacataaaggagtgaatataaacatttgtatcgatgttatgtgtgtctgacacacgttggac |
2716434 |
T |
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| Q |
308 |
aacaaacattccttcaatttgaatttttagtgctataataatttataaccaaactcctactcaaataaaaaactaaatgtcacatattaagatgtatagt |
407 |
Q |
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| T |
2716435 |
aacaaacattccttcaatttgaattgttagtgctataataatttataaccaaactcctactcaaataaaaaactaaatgtcacatattaagatgtatagt |
2716534 |
T |
|
| Q |
408 |
gacatactaattccatggctcagaaaaactggcaatgaagcagctctccttcttgcttcatgtgataattctatcttgctctttaaactcctacattaac |
507 |
Q |
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| T |
2716535 |
gacatactaattccatggctcagaaaaactggtaatgaagcagctctccttcttgcttcatgtgataattctatcttgctctttaagctcctacattaac |
2716634 |
T |
|
| Q |
508 |
atcaattgcaaaccatagtgtcaatcattagagtttagtatgtgaccac |
556 |
Q |
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| T |
2716635 |
atcaattgcaaaccatagtgtcaatcattagagtttagtatgtgaccac |
2716683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 346 - 508
Target Start/End: Original strand, 3356610 - 3356767
Alignment:
| Q |
346 |
taatttataaccaaactcctactcaaataaaaaactaaatgtcacatattaagatgtatagtgacatactaattccatggctcagaaaaactggcaatga |
445 |
Q |
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|||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||| | ||||| |
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| T |
3356610 |
taatttataaccaaacaactaggtaaataaaaaaccaaatgtcacat--taagatgtacagtgacatactaattccatggcttagaaaaactagtaatga |
3356707 |
T |
|
| Q |
446 |
agcagctctccttcttgcttcatgtgataattctatcttgctctttaaactcctacattaaca |
508 |
Q |
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| T |
3356708 |
agcagctctc---cttgcttcatgtgacaattctatcttgctccttaagctcctacattaaca |
3356767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 3356255 - 3356358
Alignment:
| Q |
8 |
agaagcaaaggatatctatatctgtaaattcatttatgaagtggtagaaagaaattttaaacaccaatatcctgttgaagaacttttgtgactgatggga |
107 |
Q |
| |
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||||||||| || |||||||||| |||||||||| |||| ||||||||| | ||||||||| || | | |||||||||||||||||| |||| ||||||| |
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| T |
3356255 |
agaagcaaaagacatctatatctataaattcattcatgacgtggtagaacgtaattttaaatactattgtcctgttgaagaacttttctgaccgatggga |
3356354 |
T |
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| Q |
108 |
atta |
111 |
Q |
| |
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|||| |
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|
| T |
3356355 |
atta |
3356358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 485
Target Start/End: Complemental strand, 44433541 - 44433488
Alignment:
| Q |
432 |
aaaactggcaatgaagcagctctccttcttgcttcatgtgataattctatcttg |
485 |
Q |
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|||| ||| ||||||||||||| |||||| ||||||||||| | |||||||||| |
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| T |
44433541 |
aaaattggtaatgaagcagctcgccttctcgcttcatgtgacacttctatcttg |
44433488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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