View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18022_high_2 (Length: 576)

Name: NF18022_high_2
Description: NF18022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18022_high_2
NF18022_high_2
[»] chr7 (17 HSPs)
chr7 (14-561)||(29922090-29922631)
chr7 (14-200)||(29476437-29476623)
chr7 (11-157)||(29881086-29881232)
chr7 (14-204)||(29106591-29106781)
chr7 (14-149)||(29899206-29899341)
chr7 (15-144)||(29920141-29920270)
chr7 (14-200)||(29454200-29454386)
chr7 (14-155)||(29867071-29867212)
chr7 (14-149)||(29885086-29885221)
chr7 (14-155)||(29895298-29895439)
chr7 (351-418)||(29431429-29431496)
chr7 (56-155)||(29859286-29859385)
chr7 (54-154)||(29431135-29431235)
chr7 (58-117)||(18953046-18953105)
chr7 (58-117)||(18983093-18983152)
chr7 (58-117)||(18997739-18997798)
chr7 (351-411)||(29898953-29899013)
[»] chr1 (8 HSPs)
chr1 (14-154)||(4366592-4366732)
chr1 (355-419)||(4366924-4366988)
chr1 (56-130)||(4570780-4570854)
chr1 (59-149)||(21855525-21855615)
chr1 (64-120)||(4016919-4016974)
chr1 (58-141)||(10218825-10218908)
chr1 (26-131)||(39379170-39379275)
chr1 (14-141)||(17560870-17560997)
[»] chr4 (4 HSPs)
chr4 (14-149)||(1686382-1686517)
chr4 (14-149)||(3565582-3565717)
chr4 (14-131)||(3557582-3557699)
chr4 (64-146)||(3561105-3561187)
[»] chr3 (1 HSPs)
chr3 (14-146)||(3625575-3625707)
[»] chr5 (1 HSPs)
chr5 (59-149)||(24331041-24331131)
[»] scaffold0242 (2 HSPs)
scaffold0242 (50-200)||(13863-14013)
scaffold0242 (50-200)||(22698-22848)


Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 14 - 561
Target Start/End: Original strand, 29922090 - 29922631
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||    
T  29922090 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaa------gaggcaacagatattgattgtatgtctccgtccctaaat 29922183  T
Q  114 caagagacacgataacaaaatgttcaactgtaatattcttaacacgatagggaaggtcattgtggatagccaaccagttaaaagtgccacttacgtaaac 213  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29922184 caagagaaacgataacaaaatgttcaactgtaatattcttaacacgatagggaaggtcgttgtggatagccaaccagttaaaagtgccacttacgtaaac 29922283  T
Q  214 accatcacacatacaatgttcactatgaatatgatcactatagtccaaacgaagaggaaccaccgggaaaaatgcaatatctctccaaacatgatcaccc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29922284 accatcacacatacaatgttcactatgaatatgatcactatagtccaaacgaagaggaaccaccgggaaaaatgcaatatctctccaaacatgatcaccc 29922383  T
Q  314 gaacctagaatctttatatttctatttccttttagtcgattgtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaat 413  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29922384 gaacctagaatctttatatttctatttccttttagtctattgtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaat 29922483  T
Q  414 tgaaatcgcctccataccccgaaattggtccaaaatcataaaaatacccaaatttttctgatgttgttgtcctgatggatgggttccaaacacagaacca 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29922484 tgaaatcgcctccataccccgaaattggtccaaaatcataaaaatacccaaatttttctgatgttgttgtcctgatggatgggttccaaacacggaacca 29922583  T
Q  514 atactctctacgccaattctcttgatacccatcatgggttaaagaagt 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29922584 atactctctacgccaattctcttgatacccatcatgggttaaagaagt 29922631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 29476437 - 29476623
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    |||||| |||||||||||||| ||||  ||||    |||||||||| |||||||||| |||||||||   | ||||||||||||||||| || |||||||    
T  29476437 caaaggaagccccccaacacagcaacaattggcagggcagatggcatttcatcaaaatcacgaggcagacggtattgattgtatgtctcagttcctaaat 29476536  T
Q  114 caagagacacgataacaaaatgttcaactgtaatattcttaacacgatagggaaggtcattgtggatagccaaccagttaaaagtgc 200  Q
    | || || || |||||||| || |||||| ||| |||||||| |  ||||  || ||||||||| ||||||||||| |||| |||||    
T  29476537 cgagtgaaacaataacaaactgctcaactctaagattcttaatatcatagtcaaagtcattgtgaatagccaaccaattaagagtgc 29476623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 29881232 - 29881086
Alignment:
Q  11 aagcaaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtcccta 110  Q
    |||||||||||| || |||||||||||||  |||||  ||||| |||||| ||||||||||   ||||||   ||||||||||||||||||| ||||| |    
T  29881232 aagcaaaggcagtcctccaacacaccaacaattggtcgtgcaggtggcacctcatcaaaactcggaggcagtcgatattgattgtatgtctcagtcccca 29881133  T
Q  111 aatcaagagacacgataacaaaatgttcaactgtaatattcttaaca 157  Q
    ||||||| || || |||||||| || ||||| ||||||| |||||||    
T  29881132 aatcaagtgaaacaataacaaattggtcaacagtaatatccttaaca 29881086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 29106781 - 29106591
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    |||||||||||||||||||||||||| |||||   |   || |||||||||||||| ||||||||||||   |||||||||||||||||| |||   |||    
T  29106781 caaaggcagccccccaacacaccaactgttggccgttttgacggcacttcatcaaacccacgaggcaacttgtattgattgtatgtctccatcctccaat 29106682  T
Q  114 caagagacacgataacaaaatgttcaactgtaatattcttaacacgatagggaaggtcattgtggatagccaaccagttaaaagtgccact 204  Q
    |||| || || |||||||| ||  |||||||||||| || || |  |||    |||  |||||| |||||||||||||||| |||||||||    
T  29106681 caagtgaaacaataacaaattgaccaactgtaatatcctcaaaattataatcgaggctattgtgaatagccaaccagttaagagtgccact 29106591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 29899341 - 29899206
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    |||||||||||||||||||||||||  ||||| ||  |||| |||||||||||||| ||| |||||||||  || || || |||||||||||| | ||||    
T  29899341 caaaggcagccccccaacacaccaaatgttggctccacagacggcacttcatcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaat 29899242  T
Q  114 caagagacacgataacaaaatgttcaactgtaatat 149  Q
    |||| || || |||||||| ||  ||||||| ||||    
T  29899241 caagtgaaacaataacaaattgcccaactgtgatat 29899206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 29920141 - 29920270
Alignment:
Q  15 aaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatc 114  Q
    |||||||||| |||||||||||||  ||||||||| ||  ||||||||||||||| ||||| ||||  | ||| |||| ||| ||||| ||||| ||||     
T  29920141 aaaggcagcctcccaacacaccaagagttggttctacaagtggcacttcatcaaatccacggggcagtaaatactgatggtaggtctctgtccccaaatg 29920240  T
Q  115 aagagacacgataacaaaatgttcaactgt 144  Q
     ||||| || |||||||| |||||||||||    
T  29920241 gagagaaacaataacaaattgttcaactgt 29920270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 29454200 - 29454386
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    |||||||  |||||||| |||||||| |||||  || ||| |||||| ||||||||| ||||||||||  | || | |||||| ||||| ||||| ||||    
T  29454200 caaaggcttccccccaaaacaccaaccgttggagcttcaggtggcacctcatcaaaatcacgaggcaattggtacttattgtacgtctcagtccccaaat 29454299  T
Q  114 caagagacacgataacaaaatgttcaactgtaatattcttaacacgatagggaaggtcattgtggatagccaaccagttaaaagtgc 200  Q
    |||| || |  |||||||| || |||||||| |||||||||  |  |||| | | || |||||| ||||||||||| |||| |||||    
T  29454300 caagtgaaataataacaaactgctcaactgtgatattcttactattatagtgcaagtgattgtgaatagccaaccaattaagagtgc 29454386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 29867212 - 29867071
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    ||||||||| ||||||||||||||||  | || | |||||| ||||| ||||||||||   ||||||   | |||||||||||| |||| ||||| ||||    
T  29867212 caaaggcagtcccccaacacaccaacaataggatatgcagacggcacctcatcaaaacttggaggcagtcggtattgattgtatttctcagtccccaaat 29867113  T
Q  114 caagagacacgataacaaaatgttcaactgtaatattcttaa 155  Q
    |||| || || |||||||| || ||||| ||||||| |||||    
T  29867112 caagtgaaacaataacaaactggtcaacagtaatatccttaa 29867071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 29885221 - 29885086
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    |||||||||||||| | ||||||||  ||||| ||  |||| |||||||||||||| ||| |||||||||  || || || |||||||||||| | ||||    
T  29885221 caaaggcagccccctagcacaccaaatgttggctccacagacggcacttcatcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaat 29885122  T
Q  114 caagagacacgataacaaaatgttcaactgtaatat 149  Q
    |||| || || |||||||| ||  ||||||| ||||    
T  29885121 caagtgaaacaataacaaattgcccaactgtgatat 29885086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 29895439 - 29895298
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    ||||| ||||| ||||| |||| ||| ||||||| || ||  ||||| |||||||||||  |||||| ||| ||||||||||| |||||||| || |  |    
T  29895439 caaagacagccacccaagacactaaccgttggttgtgtagggggcacctcatcaaaacccagaggcagcaggtattgattgtaagtctccgttcccagct 29895340  T
Q  114 caagagacacgataacaaaatgttcaactgtaatattcttaa 155  Q
    |||| || || |||||||| || |||||| ||| ||||||||    
T  29895339 caagcgaaacaataacaaattgctcaactctaagattcttaa 29895298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 29431429 - 29431496
Alignment:
Q  351 gattgtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaattgaaa 418  Q
    ||||||||||| |||||| |||||||||||| || |||| ||||||||||||||| || || ||||||    
T  29431429 gattgtaacgggacgccaccaccttataagtgtcggttgcattgtcaaaaccaaagttaaacttgaaa 29431496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 29859385 - 29859286
Alignment:
Q  56 ggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatattcttaa 155  Q
    ||||| |||||||| ||||||||||| |  |||||||||||||| ||  |||| |||||||| || || |||||||| ||||| || ||||||| |||||    
T  29859385 ggcacctcatcaaacccacgaggcaataagtattgattgtatgtttcactccccaaatcaagtgaaacaataacaaattgttcgacagtaatatccttaa 29859286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 154
Target Start/End: Original strand, 29431135 - 29431235
Alignment:
Q  54 atggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatattctt 153  Q
    ||||||| ||||||||| ||||||||||||  || | ||| |||||||| ||||| |||||||| || |  |||||||| || |||| |||||||| |||    
T  29431135 atggcacctcatcaaaatcacgaggcaacaagtacttattatatgtctcagtccccaaatcaagcgaaagaataacaaactgctcaattgtaatatcctt 29431234  T
Q  154 a 154  Q
    |    
T  29431235 a 29431235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 18953046 - 18953105
Alignment:
Q  58 cacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaag 117  Q
    |||||||||||||||| |||| |  ||| |||||||||||||||||||||  ||||||||    
T  18953046 cacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaag 18953105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 18983093 - 18983152
Alignment:
Q  58 cacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaag 117  Q
    |||||||||||||||| |||| |  ||| |||||||||||||||||||||  ||||||||    
T  18983093 cacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaag 18983152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 18997739 - 18997798
Alignment:
Q  58 cacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaag 117  Q
    |||||||||||||||| |||| |  ||| |||||||||||||||||||||  ||||||||    
T  18997739 cacttcatcaaaaccaagagggagtagaaattgattgtatgtctccgtcctcaaatcaag 18997798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 29899013 - 29898953
Alignment:
Q  351 gattgtaacggaacgccaacaccttataagtatcagtt-gaattgtcaaaaccaaatttgaa 411  Q
    ||||||||||| | |||| |||||||||||| || ||| |||||||||||||||||||||||    
T  29899013 gattgtaacggtatgccaccaccttataagt-tctgtttgaattgtcaaaaccaaatttgaa 29898953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 4366592 - 4366732
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    ||||||||| |||||||||||||||| |||||||| | || ||||||||| |||||||||||||||| ||  ||||||||||||||||| || || | ||    
T  4366592 caaaggcagtcccccaacacaccaactgttggttcagtaggtggcacttcttcaaaaccacgaggcagcaagtattgattgtatgtctctgtacccagat 4366691  T
Q  114 caagagacacgataacaaaatgttcaactgtaatattctta 154  Q
    |||| || || |||||||| || ||||| ||||||||||||    
T  4366692 caagcgaaacaataacaaattgctcaacggtaatattctta 4366732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 4366924 - 4366988
Alignment:
Q  355 gtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaattgaaat 419  Q
    ||||||| || ||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  4366924 gtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaat 4366988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 4570854 - 4570780
Alignment:
Q  56 ggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataaca 130  Q
    |||||||||||||  |||||||||| ||  ||||||||||||||||||||| | ||||||||||| || ||||||    
T  4570854 ggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaataaca 4570780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 21855525 - 21855615
Alignment:
Q  59 acttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatat 149  Q
    ||||||||||||||| ||||||  |  ||||||||||||||||||||| | ||||||||||| || || ||||| || ||||| |||||||    
T  21855525 acttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaagagaaacaatcacaaactggtcaacagtaatat 21855615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 4016919 - 4016974
Alignment:
Q  64 atcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagaga 120  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||    
T  4016919 atcaaaaccacgaggcaccatgtattgattgtatgtctccgtccc-aaatcaagaga 4016974  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 10218908 - 10218825
Alignment:
Q  58 cacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaac 141  Q
    ||||| |||||||||||  |||| ||  ||||||||||||||||||||| | ||||||||||| || |||||| | ||||||||    
T  10218908 cacttgatcaaaaccacagggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaataacagagtgttcaac 10218825  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 39379170 - 39379275
Alignment:
Q  26 cccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacga 125  Q
    |||||||||||||   |||| |||||||| || || ||||||||||| | ||||||| |||| || |||||||| || ||||| |||||||| || || |    
T  39379170 cccaacacaccaaaacttggctctgcagacggaacctcatcaaaaccccaaggcaaccgatactggttgtatgtttcagtccccaaatcaagtgaaacaa 39379269  T
Q  126 taacaa 131  Q
    ||||||    
T  39379270 taacaa 39379275  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 17560870 - 17560997
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    ||||| ||| |||||||||||||||  |||||||||   | |||||| || |||||| |||||||||| |  || | |||||||||||| ||||  ||||    
T  17560870 caaagacagtcccccaacacaccaaaagttggttctatggttggcacctcgtcaaaatcacgaggcaataagtactaattgtatgtctcagtcctcaaat 17560969  T
Q  114 caagagacacgataacaaaatgttcaac 141  Q
    |||| || || ||| |||| ||||||||    
T  17560970 caagcgaaacaataccaaattgttcaac 17560997  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 1686382 - 1686517
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    ||||||||| |||||||||||||||| ||||| |||  |   ||||| ||| |||||||  |||||||| ||||||||||||||||||| ||||| ||||    
T  1686382 caaaggcagtcccccaacacaccaacagttggctctataagcggcacctcagcaaaaccctgaggcaaccgatattgattgtatgtctcagtccccaaat 1686481  T
Q  114 caagagacacgataacaaaatgttcaactgtaatat 149  Q
     ||| || || |||||||  |||||||| |||||||    
T  1686482 taagtgaaacaataacaatctgttcaacagtaatat 1686517  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 3565717 - 3565582
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    ||||||||| ||| |||||||||||| ||||| ||  |||  || || |||||||||||  |||||||| ||||||| ||||||| ||| ||||||||||    
T  3565717 caaaggcagtccctcaacacaccaacagttggctcctcagtcggaacctcatcaaaacccagaggcaaccgatattgtttgtatgactcagtccctaaat 3565618  T
Q  114 caagagacacgataacaaaatgttcaactgtaatat 149  Q
    |||| || || |||||||  || ||||| |||||||    
T  3565617 caagtgaaacaataacaatctgctcaacagtaatat 3565582  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 3557699 - 3557582
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    ||||| ||| ||| |||||||||||||||||| ||  |||  ||||  ||||||||||| ||||||||| ||||||| ||||||| ||| ||||| ||||    
T  3557699 caaagacagtccctcaacacaccaacggttggctcctcagtcggcatctcatcaaaaccccgaggcaaccgatattggttgtatgactcagtccccaaat 3557600  T
Q  114 caagagacacgataacaa 131  Q
    |||| || || |||||||    
T  3557599 caagtgaaacaataacaa 3557582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 3561105 - 3561187
Alignment:
Q  64 atcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaa 146  Q
    ||||||||| |||||||||| |||||||||||||||||| || || | |||||| || || |||||||| || ||||||||||    
T  3561105 atcaaaaccccgaggcaacaaatattgattgtatgtctcagttcccagatcaagcgaaacaataacaaactgctcaactgtaa 3561187  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 3625707 - 3625575
Alignment:
Q  14 caaaggcagccccccaacacaccaacggttggttctgcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaat 113  Q
    ||||||||| ||||||||||||||||  ||||||||  ||  ||||| | |||||| |||||||||| |  ||| |||||||||||||| ||||| ||||    
T  3625707 caaaggcagtcccccaacacaccaacatttggttctataggaggcaccttatcaaatccacgaggcagccaatagtgattgtatgtctcagtccccaaat 3625608  T
Q  114 caagagacacgataacaaaatgttcaactgtaa 146  Q
    |||| || || |||||||| || ||||| ||||    
T  3625607 caagtgaaacaataacaaattgctcaacagtaa 3625575  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 24331041 - 24331131
Alignment:
Q  59 acttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatat 149  Q
    ||||||||||||||| ||||||  |  ||||||||||||||||||||| | ||||||||||| || || ||||| || ||||| |||||||    
T  24331041 acttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaagagaaacaatcacaaactggtcaacagtaatat 24331131  T

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Target: scaffold0242 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 13863 - 14013
Alignment:
Q  50 gcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatat 149  Q
    |||||||||| ||||| |||| |||||||||   | || |||||||||||||| || |  ||||| || || || |||||||| || |||||| ||| ||    
T  13863 gcagatggcatttcatgaaaatcacgaggcagacggtactgattgtatgtctcagttctcaaatcgagtgaaacaataacaaactgctcaactttaagat 13962  T
Q  150 tcttaacacgatagggaaggtcattgtggatagccaaccagttaaaagtgc 200  Q
    |||||| |  ||||  || ||||||||| | ||||||||| |||| |||||    
T  13963 tcttaatatcatagtcaaagtcattgtgaacagccaaccaattaagagtgc 14013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 22698 - 22848
Alignment:
Q  50 gcagatggcacttcatcaaaaccacgaggcaacagatattgattgtatgtctccgtccctaaatcaagagacacgataacaaaatgttcaactgtaatat 149  Q
    |||||||||| ||||| |||| |||||||||   | || |||||||||||||| || |  ||||| || || || |||||||| || |||||| ||| ||    
T  22698 gcagatggcatttcatgaaaatcacgaggcagacggtactgattgtatgtctcagttctcaaatcgagtgaaacaataacaaactgctcaactttaagat 22797  T
Q  150 tcttaacacgatagggaaggtcattgtggatagccaaccagttaaaagtgc 200  Q
    |||||| |  ||||  || ||||||||| | ||||||||| |||| |||||    
T  22798 tcttaatatcatagtcaaagtcattgtgaacagccaaccaattaagagtgc 22848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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