View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18022_low_1 (Length: 620)
Name: NF18022_low_1
Description: NF18022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18022_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 469 - 603
Target Start/End: Original strand, 11588669 - 11588803
Alignment:
| Q |
469 |
tatatagcttcccttttatttaacgccaattcccatgtgatagagtaacatacaatatgctatctagctatgataacccatgtttcttgataatctgctt |
568 |
Q |
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| T |
11588669 |
tatatagcttcccttttatttaacgccaattcccatgtgatagagtaacatagaatatgctatctagctatgataacccatgtttcttgataatctggtt |
11588768 |
T |
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| Q |
569 |
catatgcatatatgcaatcttcaactggaatttct |
603 |
Q |
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| T |
11588769 |
catatgcatatatgcaatcttcaactggaatttct |
11588803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 185 - 415
Target Start/End: Original strand, 12934377 - 12934607
Alignment:
| Q |
185 |
ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc |
284 |
Q |
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| T |
12934377 |
ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatc |
12934476 |
T |
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| Q |
285 |
ctggaaaggaacattgggaagcagtcaagtggatactcaggtacctgagaggtaccacgggagattgtttgtgctttggaggatctgatccaatcttgaa |
384 |
Q |
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| T |
12934477 |
cgggaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggaggatcagattcgcttttgaa |
12934576 |
T |
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| Q |
385 |
gggctatacagatgctgatatggcaggtgac |
415 |
Q |
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| T |
12934577 |
aggctacacagatgcggatatggcaggtgac |
12934607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 185 - 415
Target Start/End: Original strand, 15300163 - 15300393
Alignment:
| Q |
185 |
ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc |
284 |
Q |
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| T |
15300163 |
ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatc |
15300262 |
T |
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| Q |
285 |
ctggaaaggaacattgggaagcagtcaagtggatactcaggtacctgagaggtaccacgggagattgtttgtgctttggaggatctgatccaatcttgaa |
384 |
Q |
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| T |
15300263 |
cgggaaaagaacattgggaagttgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggaggatcagattcgattttgaa |
15300362 |
T |
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| Q |
385 |
gggctatacagatgctgatatggcaggtgac |
415 |
Q |
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| T |
15300363 |
aggctacacatatgcggatatggcaggtgac |
15300393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 185 - 415
Target Start/End: Complemental strand, 28608227 - 28607996
Alignment:
| Q |
185 |
ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc |
284 |
Q |
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| T |
28608227 |
ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatc |
28608128 |
T |
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| Q |
285 |
ctgg-aaaggaacattgggaagcagtcaagtggatactcaggtacctgagaggtaccacgggagattgtttgtgctttggaggatctgatccaatcttga |
383 |
Q |
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| T |
28608127 |
cgggaaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggaggatcaaattcgattttga |
28608028 |
T |
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| Q |
384 |
agggctatacagatgctgatatggcaggtgac |
415 |
Q |
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| T |
28608027 |
aagcctacacagatgctgatatggcaggtgac |
28607996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 185 - 415
Target Start/End: Original strand, 14177647 - 14177877
Alignment:
| Q |
185 |
ccttattcttcagcagtcggaagcttgatgtatgcaatggtatgtactagacctgatattgctcacgcagttggtgttgtcagcaggtttcttgaaaatc |
284 |
Q |
| |
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| T |
14177647 |
ccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgtagttggagttgttagcaggtttctttccaatc |
14177746 |
T |
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| Q |
285 |
ctggaaaggaacattgggaagcagtcaagtggatactcaggtacctgagaggtaccacgggagattgtttgtgctttggaggatctgatccaatcttgaa |
384 |
Q |
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| T |
14177747 |
cgggaaaagaacactgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggaggatcaaattcgattttgaa |
14177846 |
T |
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| Q |
385 |
gggctatacagatgctgatatggcaggtgac |
415 |
Q |
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| T |
14177847 |
aggctacacagatgcggatatggcaggtgac |
14177877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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