View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18022_low_2 (Length: 591)
Name: NF18022_low_2
Description: NF18022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18022_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 118 - 455
Target Start/End: Complemental strand, 24243541 - 24243204
Alignment:
| Q |
118 |
tcatttatcctcaaatgaaatttgggagggtaatccagacacgatccaagcttaagttgcgtcattgtcacttctctaatttattttaccagatcaaacc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24243541 |
tcatttatcctcaaatgaaatttgggagggtaaccaagacacgatccaagcttaagttgcgtcattgtcacttctctaatttattttaccagatcaaacc |
24243442 |
T |
|
| Q |
218 |
tgaaccattatatttgggttgagatgggttgtaagaccgaatcaagattctcacgtctcaatttaacttatccttattgtgagatgatcttttactagat |
317 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24243441 |
tgaaccattataattggattgagatgggttgtaagaccgaatcaagattcccacgtctcaatttaacttatccttattgtgagatgatcttttactagct |
24243342 |
T |
|
| Q |
318 |
atctctaatcgatagcatattgaaatattcatctaagatcactttagtgattttcttcttccctaagttaggattcaccatttataatatgctggccaat |
417 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24243341 |
atctctaatcgatagcataatgaaatattcatctaagatcactttagtgattttcttcttccctaagttaggattcaccatttataatatgctgaccaat |
24243242 |
T |
|
| Q |
418 |
ttgtgaaactatgtttcttagagatcagaatctattgt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24243241 |
ttgtgaaactatgtttcttagagatcagaatctattgt |
24243204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University