View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18022_low_4 (Length: 506)

Name: NF18022_low_4
Description: NF18022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18022_low_4
NF18022_low_4
[»] chr1 (2 HSPs)
chr1 (229-492)||(48261730-48261993)
chr1 (13-200)||(48262022-48262209)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 229 - 492
Target Start/End: Complemental strand, 48261993 - 48261730
Alignment:
Q  229 gtctatctattaatcattcaattcaaccgagttcaaccgattgaaccatatgatttgaagatctcacatgttcatatccttttatttaaaagctttgact 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48261993 gtctatctattaatcattcaattcaaccgagttcaaccgattgaaccatatgatttgaagatctcacatgttcatatccttttatttaaaagctttgact 48261894  T
Q  329 ttgaccttatatttgccaaaagctatctctttgggacagtagtgtttaggttaaataaactaaagaataatatcttgatttctagcagtaacagccattt 428  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48261893 ttgaccttatatttgccaaaagctatctctttgagacagtagtgtttaggttaaataaactaaagaataatatcttgatttctagcagtaacaaccattt 48261794  T
Q  429 cttaaggaaatttcaatctgctcaagttttctgcccatagagaaagggatttgtggggtggagg 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48261793 cttaaggaaatttcaatctgctcaagttttctgcccatagagaaagggatttgtggggtggagg 48261730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 48262209 - 48262022
Alignment:
Q  13 aatataaccatgttataatagtacaaagttgtagaaaaaaggatgcccctgtacatgaatttcaaatgatgctttaaaaattggatgaaattgtcttttg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48262209 aatataaccatgttataatagtacaaagttgtagaaaaaaggatgcccctgtacatgaatttcaaatgatgctttaaaaattggatgaaattgtcttttg 48262110  T
Q  113 aaccgagaatcgatcagtttgacaattggtttggtcccgctttcaaactatttggctgaatcaaattgaacgtgtgcgattcaaccaa 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||    
T  48262109 aacagagaatcgatcagtttgacaattggtttggtcccgctttcaaattgtttggctgaatcaaattgaacgtgtgcaattcaaccaa 48262022  T

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