View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18022_low_9 (Length: 253)
Name: NF18022_low_9
Description: NF18022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18022_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 12295012 - 12295246
Alignment:
| Q |
19 |
atcgaacctgagattttgagaaggagtatacttcgaagttccaagtcaataccatcaggccaactctggtggatttaattaaccatttttactactaaca |
118 |
Q |
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| T |
12295012 |
atcgaacctaaaattttaagaaggagtatacttcgaagttccaagtcaataccatcggaccaactctggtaggtttaattaaccatttttactactaaca |
12295111 |
T |
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| Q |
119 |
atgtagaatctactattacatctttttcccatttcttattttaaattaaactaattcataccattactagtaggcaactttaattagcatatactacttc |
218 |
Q |
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| T |
12295112 |
atgtagaatctactattacatctttttcccatttcttattttaaattaaactaattcataccattactagtaggcaactttaattagcatatactacttc |
12295211 |
T |
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| Q |
219 |
atatgtgtgtgtttcttacttgacaaagaatggtt |
253 |
Q |
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| T |
12295212 |
atatgtgtgtgtttcttacttgacaaagaatggtt |
12295246 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 27255412 - 27255357
Alignment:
| Q |
14 |
agaatatcgaacctgagattttgagaaggagtatacttcgaagttccaagtcaata |
69 |
Q |
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| T |
27255412 |
agaaaatcaaacctgagactttgagaaggagtatacttccaaattccaagtcaata |
27255357 |
T |
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