View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18023_high_8 (Length: 364)

Name: NF18023_high_8
Description: NF18023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18023_high_8
NF18023_high_8
[»] chr5 (1 HSPs)
chr5 (36-311)||(16183651-16183924)
[»] chr7 (1 HSPs)
chr7 (36-86)||(28592069-28592119)
[»] chr2 (1 HSPs)
chr2 (14-64)||(25642917-25642967)
[»] chr1 (2 HSPs)
chr1 (24-86)||(36353257-36353319)
chr1 (13-81)||(29114558-29114627)
[»] chr4 (2 HSPs)
chr4 (1-70)||(35849981-35850050)
chr4 (1-69)||(29540222-29540290)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 36 - 311
Target Start/End: Complemental strand, 16183924 - 16183651
Alignment:
Q  36 ataattgtatctagatcaatatattctattatatctttctcgatatataaatg-actagtccatatatcttttcttgtagcactgacgatcacgagttgt 134  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||||||||| | ||||| |||| || |||||||| | |||||||||||| ||||||||    
T  16183924 ataaatgtatctagatcaatatattctatcatatcttcctcgatatataaaaggactagaccatttaacttttcttatggcactgacgatctcgagttgt 16183825  T
Q  135 tattgaatattagtgatatgctcaacattattttcatannnnnnnagtttctcactaaaatgattccaatcattcactctttcatttattaaagtactct 234  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||| |||||||||||| |||||||||||||| |||||    
T  16183824 tattgaatattagtgatatgctcaacattattttcatatttttttagtttctcactaaaat-attctaatcattcactccttcatttattaaaggactct 16183726  T
Q  235 tgtcgctgctatattatgataagtgaacaatttacagagnnnnnnnntgtatccacatgtagagagtaaaccaacca 311  Q
    |||||||||  |||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||    
T  16183725 tgtcgctgc--tattatgataagtgaacaatttactgaggaaaaaaatgtatccacatgtagagagtaaaccaacca 16183651  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 28592069 - 28592119
Alignment:
Q  36 ataattgtatctagatcaatatattctattatatctttctcgatatataaa 86  Q
    |||||||| |||| ||||||||||||||| ||||||||||| ||| |||||    
T  28592069 ataattgtgtctatatcaatatattctatgatatctttctcaatacataaa 28592119  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 25642917 - 25642967
Alignment:
Q  14 atttttagatataaagtcatttataattgtatctagatcaatatattctat 64  Q
    |||| |||||||||||||||| |||||||| |||| |||||||| ||||||    
T  25642917 atttctagatataaagtcattaataattgtgtctacatcaatatgttctat 25642967  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 36353319 - 36353257
Alignment:
Q  24 ataaagtcatttataattgtatctagatcaatatattctattatatctttctcgatatataaa 86  Q
    ||||||||| | |||||| | |||| ||||||||||||||  ||||||||||| |||||||||    
T  36353319 ataaagtcactaataattatgtctacatcaatatattctagcatatctttctcaatatataaa 36353257  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 29114627 - 29114558
Alignment:
Q  13 catttttagatataaagtcatt-tataattgtatctagatcaatatattctattatatctttctcgatat 81  Q
    ||||| |||||| ||||||| | ||||||||| || | ||||||||||||||| ||||||||||| ||||    
T  29114627 catttatagataaaaagtcactatataattgtgtcaacatcaatatattctatcatatctttctcaatat 29114558  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35849981 - 35850050
Alignment:
Q  1 aattcctacaaacatttttagatataaagtcatttataattgtatctagatcaatatattctattatatc 70  Q
    ||||| |||||||||||||||||  ||||||||| |||||||| |||| | || ||| |||||| |||||    
T  35849981 aattcatacaaacatttttagatgcaaagtcattaataattgtgtctacagcattatgttctatcatatc 35850050  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29540222 - 29540290
Alignment:
Q  1 aattcctacaaacatttttagatataaagtcatttataattgtatctagatcaatatattctattatat 69  Q
    ||||| |||||  |||| |||||  ||||||||| |||||||| |||| ||||||||||||||| ||||    
T  29540222 aattcatacaagtatttctagatgcaaagtcattaataattgtgtctacatcaatatattctatcatat 29540290  T

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