View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18023_low_3 (Length: 545)
Name: NF18023_low_3
Description: NF18023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18023_low_3 |
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| [»] scaffold0038 (1 HSPs) |
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Alignment Details
Target: scaffold0038 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 80 - 530
Target Start/End: Complemental strand, 42768 - 42306
Alignment:
| Q |
80 |
ctatgagtgtgtgaatgtgattgtaataatataataaaacaagattgaaccaattaaatagcaacgtggtttcacttttgcagctgtcaaatttatttct |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42768 |
ctatgagtgtgtgaatgtgattgtaataatataataaaacaagattgaaaaaattaaatagcaacgtggtttcacttttgcagctgtctaatttatttct |
42669 |
T |
|
| Q |
180 |
cttttcctga----------------ttcacaaccatacactaaagatagatatcaagttttgacttagaataacaactagaaatgtcagtttagtagat |
263 |
Q |
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||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
42668 |
cttttgctgacctgtctgataggcaattcacaaccatacactaaatatagatatcaagttttgacatagaataacaactagaaatgtcagtttggtagat |
42569 |
T |
|
| Q |
264 |
gagattaaatatcgtaaagacttttgaggtctaaacaaaatattacttaagctttcaattcatttttagggtcctcccacctgaaaatatcagtttgatt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| | |
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| T |
42568 |
gagattaaatatcgtaaagacttttgaggtctaaacaaaatattacttaagctttcaattcatttttaggg---tcccatctgaaaatgtcaatttgact |
42472 |
T |
|
| Q |
364 |
tttaaggcattcattaagtttcttacttggtaaaattgcagacccaaataaaaagcacactggtcctactaataatagaatgaaaacttgagnnnnnnng |
463 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
42471 |
tttaaggcattcatgaagtttcttacttggtaaaattgcagattcaaat-aaaagcacactggccctactaataatagaatgaaaacttgagaaaaaaag |
42373 |
T |
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| Q |
464 |
ggagagataatattaagctcttttgaatcacatgaaaagaaatgataatggagacttggttggtcct |
530 |
Q |
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| T |
42372 |
cgagagagaatattaaactcttttgaatcacatgaaaagaaatgataatggagacttggttggtcct |
42306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 80 - 530
Target Start/End: Complemental strand, 28242606 - 28242144
Alignment:
| Q |
80 |
ctatgagtgtgtgaatgtgattgtaataatataataaaacaagattgaaccaattaaatagcaacgtggtttcacttttgcagctgtcaaatttatttct |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28242606 |
ctatgagtgtgtgaatgtgattgtaataatataataaaacaagattgaaaaaattaaatagcaacgtggtttcacttttgcagctgtctaatttatttct |
28242507 |
T |
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| Q |
180 |
cttttcctga----------------ttcacaaccatacactaaagatagatatcaagttttgacttagaataacaactagaaatgtcagtttagtagat |
263 |
Q |
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| T |
28242506 |
cttttgctgacctgtctgataggcaattcacaaccatacactaaatatagatatcaagttttgacatagaataacaactagaaatgtcagtttggtagat |
28242407 |
T |
|
| Q |
264 |
gagattaaatatcgtaaagacttttgaggtctaaacaaaatattacttaagctttcaattcatttttagggtcctcccacctgaaaatatcagtttgatt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| | |
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| T |
28242406 |
gagattaaatatcgtaaagacttttgaggtctaaacaaaatattacttaagctttcaattcatttttaggg---tcccatctgaaaatgtcaatttgact |
28242310 |
T |
|
| Q |
364 |
tttaaggcattcattaagtttcttacttggtaaaattgcagacccaaataaaaagcacactggtcctactaataatagaatgaaaacttgagnnnnnnng |
463 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
28242309 |
tttaaggcattcatgaagtttcttacttggtaaaattgcagattcaaat-aaaagcacactggccctactaataatagaatgaaaacttgagaaaaaaag |
28242211 |
T |
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| Q |
464 |
ggagagataatattaagctcttttgaatcacatgaaaagaaatgataatggagacttggttggtcct |
530 |
Q |
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| T |
28242210 |
cgagagagaatattaaactcttttgaatcacatgaaaagaaatgataatggagacttggttggtcct |
28242144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 322
Target Start/End: Complemental strand, 27671488 - 27671388
Alignment:
| Q |
222 |
ttttgacttagaataacaactagaaatgtcagtttagtagatgagattaaatatcgtaaagacttttgaggtctaaacaaaatattacttaagctttcaa |
321 |
Q |
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|||||||||| ||||||| |||||||||| ||||| ||||||| ||||||||||| ||||||||||||| || ||||||||||| ||||||||| |||| |
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| T |
27671488 |
ttttgacttaaaataacagctagaaatgtgagtttggtagatgtgattaaatatcagaaagacttttgagatccaaacaaaatatcacttaagctctcaa |
27671389 |
T |
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| Q |
322 |
t |
322 |
Q |
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| T |
27671388 |
t |
27671388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 376
Target Start/End: Original strand, 25105429 - 25105516
Alignment:
| Q |
286 |
tttgaggtctaaacaaaatattacttaagctttcaattcatttttagggtcctcccacctgaaaatatcagtttgatttttaaggcattca |
376 |
Q |
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||||||||| ||||||||||| ||||||||| ||||||||||||||||| |||||| || ||| ||||||||||||||||| |||||| |
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| T |
25105429 |
tttgaggtccaaacaaaatatcacttaagctctcaattcatttttaggg---tcccacttgggaatgtcagtttgatttttaagtcattca |
25105516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 27611729 - 27611652
Alignment:
| Q |
296 |
aaacaaaatattacttaagctttcaattcatttttagggtcctcccacctgaaaatatcagtttgatttttaaggcattca |
376 |
Q |
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||||||| ||| ||||||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |
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| T |
27611729 |
aaacaaagtatcacttaagctcataattcatttttagggtcc---cacctgaaaatgtaagtttgatttttaaggcattca |
27611652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 27672450 - 27672348
Alignment:
| Q |
220 |
agttttgacttagaataacaactagaaatgtcagtttagtagatgagattaaatatcgtaaagacttttgaggtctaaacaaaatattacttaagctttc |
319 |
Q |
| |
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||||| |||| | |||||| ||| ||||||| | ||||||||||| |||||||||| |||||||||||||||| | ||||||||| |||||| || || |
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| T |
27672450 |
agtttggactaaaaataacgactggaaatgtgattttagtagatgggattaaatattaaaaagacttttgaggtccatacaaaatatcacttaaactctc |
27672351 |
T |
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| Q |
320 |
aat |
322 |
Q |
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||| |
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| T |
27672350 |
aat |
27672348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 374
Target Start/End: Complemental strand, 27605752 - 27605666
Alignment:
| Q |
282 |
gacttttgaggtctaaacaaaatattacttaagctttcaattcatttttagggtcctcccacctgaaaatatcagtttgatttttaaggcatt |
374 |
Q |
| |
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||||||| ||||||||||||||||| || |||| ||||||||||||||| | |||||| ||||||| ||||||||| |||||||||||| |
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| T |
27605752 |
gacttttaaggtctaaacaaaatatcac---agctctcaattcatttttag---catcccacttgaaaatttcagtttgacttttaaggcatt |
27605666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 451
Target Start/End: Original strand, 25105566 - 25105621
Alignment:
| Q |
395 |
aaaattgcagacccaaataaaaagcacactggtcctactaataatagaatgaaaact |
451 |
Q |
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| T |
25105566 |
aaaatcgcagagccaaataaaa-gcacattgatcctactaataatagaatgaaaact |
25105621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 374
Target Start/End: Original strand, 26654492 - 26654578
Alignment:
| Q |
282 |
gacttttgaggtctaaacaaaatattacttaagctttcaattcatttttagggtcctcccacctgaaaatatcagtttgatttttaaggcatt |
374 |
Q |
| |
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||||||||| ||||||||||||||| || |||| ||||||||||| || |||| ||| ||||||| |||||||||||||||||||||| |
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| T |
26654492 |
gacttttgaagtctaaacaaaatatcac---agctgtcaattcatttctaaggtct---cacttgaaaatgtcagtttgatttttaaggcatt |
26654578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 374
Target Start/End: Original strand, 26760462 - 26760548
Alignment:
| Q |
282 |
gacttttgaggtctaaacaaaatattacttaagctttcaattcatttttagggtcctcccacctgaaaatatcagtttgatttttaaggcatt |
374 |
Q |
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||||||||| ||||||||||||||| || |||| ||||||||||| || |||| ||| ||||||| |||||||||||||||||||||| |
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| T |
26760462 |
gacttttgaagtctaaacaaaatatcac---agctgtcaattcatttctaaggtct---cacttgaaaatgtcagtttgatttttaaggcatt |
26760548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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