View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18023_low_4 (Length: 456)
Name: NF18023_low_4
Description: NF18023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18023_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 13400673 - 13401118
Alignment:
| Q |
1 |
tcaagaagctgaagtccctgattgatttaagatgaaagcattcaatataaagataaataggagacattgttcacaaagacaatatggtttcagactgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13400673 |
tcaagaagctgaagtccctgattgatttaagatgaaagcattcaatataaagataaataagagacattgttcacaaagacaatatggtttcagactgaaa |
13400772 |
T |
|
| Q |
101 |
aaatcagaatcaagaaagtgcccttttctgttgttcattttccagcaactagaaaaatctatgttcctctccatagacaaggtatatgtctcatggtaga |
200 |
Q |
| |
|
||||| ||||| | ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13400773 |
aaatctgaatctacaaaatgcccttttctgttgatcattttctagcaactagaaaaatctatgttcctctccatagacaaggtatatgtctcatggtaga |
13400872 |
T |
|
| Q |
201 |
atgttgtttcctatttattaatacattttttaaggaagttaaaattggacacttgatccacatttttctgatgtctactgctccatactgtaaaagcatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13400873 |
atgttgtttcctatttattaatacattttttaaggaagttaaaattggacacttgatccacatttttctgatgtctactgctccatactgtaaaagcatt |
13400972 |
T |
|
| Q |
301 |
tttctgatgtattcatcttataataaacgatcaaataccttttctattatacaattcttcaaagtttattttattgtaaatgcttctaccttatgtttgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13400973 |
tttctgatgtattcatcttataataaacgatcaaataccttttctattatacaattcttcaaagtttattttattgtaaatgcttctaccttatgtttgt |
13401072 |
T |
|
| Q |
401 |
cttgtcatcttatcttgaacaaataagcaaaacatcaacacaggtt |
446 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| ||| |||| |
|
|
| T |
13401073 |
cttgtcatcttatcttaaacaaataaacaaaacatcagcactggtt |
13401118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University