View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18023_low_6 (Length: 395)
Name: NF18023_low_6
Description: NF18023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18023_low_6 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Complemental strand, 2585851 - 2585463
Alignment:
| Q |
7 |
taaggatccttgatactttggaatcacaagaaaatatgaccgacaagttgtcatgattatcatgaagactttaaaactatgataacacggccataatcgt |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2585851 |
taaggatccttgatactttggaatcacaagaaaatatgaccgacaaggtgtcatgattatcatgaagactttaaaactatgataacacggccataatcgt |
2585752 |
T |
|
| Q |
107 |
gatcgcaaaccgtgttttaaaaccctgcttaaaatttaatcccacaaagtatgaaacttttgaactgagaaatctataaatataagatgaagggtaaagg |
206 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2585751 |
gatcacaaaccgtgttttaaaaccctgcttaaaattttatcccacaaagtatgaaacttttgaactgagaaaactataaatataagatgaagggtaaagg |
2585652 |
T |
|
| Q |
207 |
tatacttacgatccagcagttgctaatgaatatccaactgaataaacggtaccacctttagcaccatgatacataaccatcctgctaccataatatgcca |
306 |
Q |
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|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2585651 |
tatacttacgatccagcaattgctaatgaaaatccaactgaataaacggtaccacctttagcaccatgatacataaccattctgctaccataatatgcca |
2585552 |
T |
|
| Q |
307 |
taaaagaccatatagcaaaattaacaccattgcttcctatggccaagcccttagctaaaccttgtttcaatcccaacttctctgctcct |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
2585551 |
taaaagaccatatagcaaaattaacaccattgcttcctatggccaagcccttagctaaaccttgtttcaatcccaacttcactgatcct |
2585463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 72 - 395
Target Start/End: Complemental strand, 2619477 - 2619154
Alignment:
| Q |
72 |
agactttaaaactatgataacacggccataatcgtgatcgcaaaccgtgttttaaaaccctgcttaaaatttaatcccacaaagtatgaaacttttgaac |
171 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2619477 |
agactttaaaaccatgataacacggccataatcgtgatcgcataccatgttttaaaaccctgcttaaacattaatcccacaaagtatgaaacttttgaac |
2619378 |
T |
|
| Q |
172 |
tgagaaatctataaatataagatgaagggtaaaggtatacttacgatccagcagttgctaatgaatatccaactgaataaacggtaccacctttagcacc |
271 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||||| | | | || ||||||||||||||||| |
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| T |
2619377 |
tgagaaaactataaaaataagatgaagggtaaaggtatacttacgatccaccaagtgctattgaatatccaacagcaaatacagtaccacctttagcacc |
2619278 |
T |
|
| Q |
272 |
atgatacataaccatcctgctaccataatatgccataaaagaccatatagcaaaattaacaccattgcttcctatggccaagcccttagctaaaccttgt |
371 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||| |||||||||| ||||||| || |||||||||||||||| | ||||| |||||||| |||||| |
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|
| T |
2619277 |
atgatacatgaccattctgctaccataataggccatcaaagaccatacagcaaaaagaagaccattgcttcctatgcctaagcctttagctaagccttgt |
2619178 |
T |
|
| Q |
372 |
ttcaatcccaacttctctgctcct |
395 |
Q |
| |
|
||||||||||| ||| ||| |||| |
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|
| T |
2619177 |
ttcaatcccaatttcactgatcct |
2619154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 196 - 395
Target Start/End: Original strand, 2678032 - 2678231
Alignment:
| Q |
196 |
aagggtaaaggtatacttacgatccagcagttgctaatgaatatccaactgaataaacggtaccacctttagcaccatgatacataaccatcctgctacc |
295 |
Q |
| |
|
|||||||||| ||||||||| ||||| || ||||||||| |||||| | | | || |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
2678032 |
aagggtaaagatatacttacaatccaccaagtgctaatgatgctccaacagcaaatacagtaccacctttagcaccatgatacatgaccattctgctacc |
2678131 |
T |
|
| Q |
296 |
ataatatgccataaaagaccatatagcaaaattaacaccattgcttcctatggccaagcccttagctaaaccttgtttcaatcccaacttctctgctcct |
395 |
Q |
| |
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|||| | | |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||| |
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| T |
2678132 |
ataaaaggacataaaggaccatatagcaaaaacaacaccattgcttcctatggccaagcctttagctaagccttgtttcaatcccaacttcactgatcct |
2678231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 2601076 - 2601223
Alignment:
| Q |
239 |
tccaactgaataaacggtaccacctttagcaccatgatacataaccatcctgctaccataatatgccataaaagaccatatagcaaaattaacaccattg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | ||| || ||||||| |||||| || ||||||| |
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|
| T |
2601076 |
tccaactgaataaacggtaccacctttagcaccatgatacatgaccattctgctaccataataggacatcaacgaccatacggcaaaaacaagaccattg |
2601175 |
T |
|
| Q |
339 |
cttcctatggccaagcccttagctaaaccttgtttcaatcccaacttc |
386 |
Q |
| |
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||||||||| | ||||| |||||||| ||||||||||||||||||||| |
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|
| T |
2601176 |
cttcctatgcctaagcctttagctaagccttgtttcaatcccaacttc |
2601223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 191 - 395
Target Start/End: Original strand, 2645809 - 2646013
Alignment:
| Q |
191 |
agatgaagggtaaaggtatacttacgatccagcagttgctaatgaatatccaactgaataaacggtaccacctttagcaccatgatacataaccatcctg |
290 |
Q |
| |
|
|||| ||||||||| ||||| |||| ||||| || |||||| ||| |||||| |||||| |||||||||||||||||||||||||| ||||| ||| |
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|
| T |
2645809 |
agataaagggtaaaagtataattacaatccaccaagtgctaaggaagctccaacattataaacagtaccacctttagcaccatgatacatgaccattctg |
2645908 |
T |
|
| Q |
291 |
ctaccataatatgccataaaagaccatatagcaaaattaacaccattgcttcctatggccaagcccttagctaaaccttgtttcaatcccaacttctctg |
390 |
Q |
| |
|
||||||||||| | ||||||||| ||| |||||| ||||||||||||||||||||| || || |||||||| ||||||||||||||||||||| ||| |
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| T |
2645909 |
ctaccataataagtcataaaagaagctattgcaaaaacaacaccattgcttcctatggcaaaacctttagctaagccttgtttcaatcccaacttcactg |
2646008 |
T |
|
| Q |
391 |
ctcct |
395 |
Q |
| |
|
|||| |
|
|
| T |
2646009 |
atcct |
2646013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 239 - 395
Target Start/End: Original strand, 2573597 - 2573753
Alignment:
| Q |
239 |
tccaactgaataaacggtaccacctttagcaccatgatacataaccatcctgctaccataatatgccataaaagaccatatagcaaaattaacaccattg |
338 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||| ||||||| || ||||||| |
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|
| T |
2573597 |
tccaactgaataaacagtaccacctttagcaccatgatacatgaccattctgctaccataatatgacatcaaagaccatacagcaaaaacaagaccattg |
2573696 |
T |
|
| Q |
339 |
cttcctatggccaagcccttagctaaaccttgtttcaatcccaacttctctgctcct |
395 |
Q |
| |
|
||||||||| | | ||| || || || ||||||||||||||||| ||| ||| |||| |
|
|
| T |
2573697 |
cttcctatgcctatgcctttcgccaagccttgtttcaatcccaatttcactgatcct |
2573753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 376
Target Start/End: Complemental strand, 2432163 - 2431993
Alignment:
| Q |
206 |
gtatacttacgatccagcagttgctaatgaatatccaactgaataaacggtaccacctttagcaccatgatacataaccatcctgctaccataatatgcc |
305 |
Q |
| |
|
|||||||||| ||||| || ||||||||| ||||||| | | || ||||| |||||||||||||||||||| ||||| |||||||||| || |
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|
| T |
2432163 |
gtatacttacaatccaccaattgctaatgttactccaactacaaatactgtaccgcctttagcaccatgatacatgaccattatgctaccatagtagaat |
2432064 |
T |
|
| Q |
306 |
ataaaagaccatatagcaaaattaacaccattgcttcctatggccaagcccttagctaaaccttgtttcaa |
376 |
Q |
| |
|
|| ||||||||||||||| | ||||||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
2432063 |
attaaagaccatatagcatagacaacaccattgcttcctatggctaagcctttagccaaaccttgtttcaa |
2431993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 255 - 395
Target Start/End: Complemental strand, 2448149 - 2448009
Alignment:
| Q |
255 |
gtaccacctttagcaccatgatacataaccatcctgctaccataatatgccataaaagaccatatagcaaaattaacaccattgcttcctatggccaagc |
354 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||| ||||| | | | || | ||||||||||||| || |||| |
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|
| T |
2448149 |
gtaccacctttagcaccatgatacatgaccattctactaccataatatgacataaaacaccattgaatatacacaatagcattgcttcctatagctaagc |
2448050 |
T |
|
| Q |
355 |
ccttagctaaaccttgtttcaatcccaacttctctgctcct |
395 |
Q |
| |
|
| ||| | || ||||||||||||||||||||| ||| |||| |
|
|
| T |
2448049 |
ctttaaccaagccttgtttcaatcccaacttcactgatcct |
2448009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 382
Target Start/End: Complemental strand, 33801957 - 33801858
Alignment:
| Q |
283 |
ccatcctgctaccataatatgccataaaagaccatatagcaaaattaacaccattgcttcctatggccaagcccttagctaaaccttgtttcaatcccaa |
382 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||| ||||||| || |||||||||||||||| ||||| |||||||| ||||||||||||||||| |
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|
| T |
33801957 |
ccattctgctaccataataggccatcaaagaccatacagcaaaaagaagaccattgcttcctatgcttaagcctttagctaagccttgtttcaatcccaa |
33801858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 382
Target Start/End: Original strand, 53664676 - 53664775
Alignment:
| Q |
283 |
ccatcctgctaccataatatgccataaaagaccatatagcaaaattaacaccattgcttcctatggccaagcccttagctaaaccttgtttcaatcccaa |
382 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||| ||||||| || |||||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
53664676 |
ccattctgctaccataataggccatcaaagaccatacagcaaaaagaagaccattacttcctatgcttaagcctttagctaagccttgtttcaatcccaa |
53664775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 382
Target Start/End: Original strand, 17874208 - 17874351
Alignment:
| Q |
239 |
tccaactgaataaacggtaccacctttagcaccatgatacataaccatcctgctaccataatatgccataaaagaccatatagcaaaattaacaccattg |
338 |
Q |
| |
|
|||||||| | |||| || || ||||||||||||||||||||||||| ||||||||||||| ||| || ||||| || ||||| |||||||||| |
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|
| T |
17874208 |
tccaactgcaaaaactgtccctcctttagcaccatgatacataaccaatttgctaccataatagcacatgaaggaccaaattgcaaagacaacaccattg |
17874307 |
T |
|
| Q |
339 |
cttcctatggccaagcccttagctaaaccttgtttcaatcccaa |
382 |
Q |
| |
|
||||| || || || || |||||||| |||||||| || ||||| |
|
|
| T |
17874308 |
cttccaattgctaaacctttagctaatccttgttttaaacccaa |
17874351 |
T |
|
Back To:
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