View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18023_low_7 (Length: 380)
Name: NF18023_low_7
Description: NF18023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18023_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 2377689 - 2377341
Alignment:
| Q |
11 |
aagcaaagggaacgtgtgtttatctggttgaacaccaatttcacagattttggcataagaatgaagtgttgtattagggaaagatgtgatgagtttgttg |
110 |
Q |
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| T |
2377689 |
aagcaaagggaacgtgtgtttat--ggttgaacatcaatttcacagattttggcataagaatgaagtgttgtattagggaaagatgtgatgagtttgttg |
2377592 |
T |
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| Q |
111 |
aagaggcgagtgtttggagtgtggattgtgttgagtagaaggtgaagagatgaagtttgaggttgagagagtggtgggtattggatgagtttggtgacga |
210 |
Q |
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| T |
2377591 |
aagaggcgagtgtctgaagtgtggattgtgttgagtagaaggtgaagagatgaagtttgaggttgagagagtggtgggcattggatgagtttggtgacga |
2377492 |
T |
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| Q |
211 |
aaaatagcgtgttgaaatgagtagatagatactggaagtgattatgatggattgaatttgattccattgttttaggttttggtggttctttgaaagggat |
310 |
Q |
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| T |
2377491 |
aaaatagcgtgttgaaatgagtagatagatactggaagtgattatgatggattgaatttgattccattgttttaggttttggtggttctttgaaagggat |
2377392 |
T |
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| Q |
311 |
gcaattgcatttgcatagcattgcttggtgttgagaagggttaacgagaac |
361 |
Q |
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| T |
2377391 |
gcaattgcatttgcatagcattgtttggtgttgagatgggttaacgagaac |
2377341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 28198622 - 28198317
Alignment:
| Q |
11 |
aagcaaagggaacgtgtgtttatctggttgaacaccaatttcacagattttggcataagaatgaagtgttgtattagggaaagatgtgatgagtttgttg |
110 |
Q |
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| T |
28198622 |
aagcaaagggaacgtgtgtttatctggttgaacacccatttcatgcattttggcataagaaagaagtgttgttttagggaaagatgttatgagtttgttg |
28198523 |
T |
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| Q |
111 |
aagaggcgagtgtttggagtgtggattgtgttgagtagaaggtgaagagatgaagtttgaggttgagagagtggtgggtattggatgagtttggtgacga |
210 |
Q |
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| T |
28198522 |
aagagacgagtgttgggagtgtggattgtgttgaggagaaggcgaagagatgaagtttgaggttgagagagtggtgcgcattggatgagtttggcgacg- |
28198424 |
T |
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| Q |
211 |
aaaatagcgtgttgaaatgagtagatagatactggaagtgattatgatggattgaatttgattccattgttttaggttttggtggttctttgaaagggat |
310 |
Q |
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| T |
28198423 |
aaaatggcgtcttg----gagtgtgtagagaccggaggtgatgatcgtggattgaatttgattccattgtttcaggttttgatggttctttgaaagggat |
28198328 |
T |
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| Q |
311 |
gcaattgcatt |
321 |
Q |
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| T |
28198327 |
gcaattgcatt |
28198317 |
T |
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