View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18023_low_9 (Length: 343)

Name: NF18023_low_9
Description: NF18023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18023_low_9
NF18023_low_9
[»] chr4 (23 HSPs)
chr4 (201-326)||(21295455-21295580)
chr4 (70-122)||(21294713-21294765)
chr4 (134-189)||(50020082-50020137)
chr4 (135-191)||(9013923-9013979)
chr4 (120-191)||(30703981-30704050)
chr4 (134-191)||(40061214-40061271)
chr4 (134-191)||(48806448-48806505)
chr4 (142-191)||(50023608-50023657)
chr4 (142-191)||(50030726-50030775)
chr4 (137-184)||(7484700-7484747)
chr4 (47-109)||(21294756-21294819)
chr4 (137-184)||(23221723-23221770)
chr4 (137-184)||(38368201-38368248)
chr4 (137-184)||(55587328-55587375)
chr4 (137-184)||(55588340-55588387)
chr4 (137-191)||(28157544-28157598)
chr4 (137-191)||(40962917-40962971)
chr4 (13-46)||(21294701-21294734)
chr4 (134-183)||(37856797-37856846)
chr4 (134-191)||(40061064-40061121)
chr4 (134-191)||(43176681-43176738)
chr4 (120-191)||(8111456-8111525)
chr4 (137-189)||(35631131-35631183)
[»] chr1 (11 HSPs)
chr1 (135-191)||(11197480-11197536)
chr1 (135-190)||(38119545-38119600)
chr1 (134-191)||(47505938-47505995)
chr1 (135-189)||(38127544-38127598)
chr1 (137-191)||(6328920-6328974)
chr1 (137-191)||(18609057-18609111)
chr1 (137-191)||(47653760-47653814)
chr1 (137-191)||(51461906-51461960)
chr1 (134-191)||(21140988-21141045)
chr1 (139-184)||(22528656-22528701)
chr1 (134-191)||(50344021-50344078)
[»] chr6 (3 HSPs)
chr6 (135-189)||(24885060-24885114)
chr6 (139-191)||(24719904-24719956)
chr6 (137-191)||(456097-456151)
[»] chr5 (4 HSPs)
chr5 (140-192)||(5197006-5197058)
chr5 (120-189)||(38971664-38971731)
chr5 (134-191)||(38408520-38408577)
chr5 (137-184)||(8680299-8680346)
[»] chr7 (13 HSPs)
chr7 (144-191)||(5541606-5541653)
chr7 (134-191)||(47521380-47521437)
chr7 (120-191)||(19804530-19804599)
chr7 (135-191)||(37345157-37345213)
chr7 (135-191)||(41734154-41734210)
chr7 (144-191)||(556708-556755)
chr7 (137-191)||(12081249-12081303)
chr7 (133-183)||(10168311-10168361)
chr7 (133-183)||(10175836-10175886)
chr7 (134-184)||(17834457-17834507)
chr7 (160-190)||(47777531-47777561)
chr7 (137-191)||(48901495-48901549)
chr7 (145-190)||(27450136-27450181)
[»] chr8 (14 HSPs)
chr8 (135-191)||(39491070-39491126)
chr8 (137-191)||(3695333-3695387)
chr8 (134-184)||(22550918-22550968)
chr8 (134-191)||(39831119-39831176)
chr8 (135-191)||(7120863-7120919)
chr8 (135-191)||(40075095-40075151)
chr8 (137-184)||(3696126-3696173)
chr8 (137-184)||(5532431-5532478)
chr8 (134-184)||(34371899-34371949)
chr8 (137-191)||(41858488-41858542)
chr8 (134-191)||(16939343-16939400)
chr8 (134-191)||(20854580-20854637)
chr8 (134-191)||(36127335-36127392)
chr8 (120-191)||(20859645-20859714)
[»] scaffold0238 (1 HSPs)
scaffold0238 (145-191)||(18949-18995)
[»] chr3 (9 HSPs)
chr3 (134-191)||(7941073-7941130)
chr3 (134-191)||(17561722-17561779)
chr3 (134-191)||(41612331-41612388)
chr3 (135-191)||(42760263-42760319)
chr3 (137-183)||(27738579-27738625)
chr3 (134-191)||(2062349-2062406)
chr3 (134-191)||(16861092-16861149)
chr3 (134-191)||(17568013-17568070)
chr3 (139-191)||(48566456-48566508)
[»] scaffold0494 (1 HSPs)
scaffold0494 (134-184)||(11507-11557)
[»] chr2 (5 HSPs)
chr2 (134-184)||(20937867-20937917)
chr2 (137-191)||(26544045-26544099)
chr2 (134-184)||(28419377-28419427)
chr2 (137-191)||(35935180-35935234)
chr2 (135-188)||(10334402-10334455)
[»] scaffold0192 (1 HSPs)
scaffold0192 (135-191)||(18953-19009)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 9e-58; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 201 - 326
Target Start/End: Original strand, 21295455 - 21295580
Alignment:
Q  201 aaatcacggtgtcaccgtaactttatcaaacagtaattccaaacatgtttttaacccacatgcttgactaaaattgattaggtgattagtaagcatacaa 300  Q
    |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21295455 aaatcacggtatcaccatgactttatcaaacagtaattccaaacatgtttttaacccacatgcttgactaaaattgattaggtgattagtaagcatacaa 21295554  T
Q  301 tacttgggattcactatctcttaaag 326  Q
    ||||||||||||||||||||||||||    
T  21295555 tacttgggattcactatctcttaaag 21295580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 21294713 - 21294765
Alignment:
Q  70 caaatcttgttagcaatttgacattccacgaggagtaggtattccaatcaagc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21294713 caaatcttgttagcaatttgacattccacgaggagtaggtattccaatcaagc 21294765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 50020137 - 50020082
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctca 189  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  50020137 aaaacttcggcagttaactaccaaagggcatttagataaattactcgtgtgtctca 50020082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 9013923 - 9013979
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||||||| || || |||||| ||||||||||||||||||||||    
T  9013923 aaaattcggcagttaactgccgaagggaatttaggtaaattactcgtgtgtctcagc 9013979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 30704050 - 30703981
Alignment:
Q  120 agccggtttccaccaaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||||||||  |||||| |||||||||||||| || ||||||||  ||||||||||||||||||||||    
T  30704050 agccggtttccac--aaaatttggcagttaactgccgaatggcatttaagtaaattactcgtgtgtctcagc 30703981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 40061214 - 40061271
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| |||||| |||||||||| |  ||||||||| ||||||||||||||||||||||    
T  40061214 aaaacttcggcggttaactgccgatgggcatttaggtaaattactcgtgtgtctcagc 40061271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 48806505 - 48806448
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| |||| |||||||||||| ||||| |||| |||||||||||||||| |||||||    
T  48806505 aaaatttcgacagttaactgccgaaaggtatttggataaattactcgtgtttctcagc 48806448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 50023608 - 50023657
Alignment:
Q  142 ggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||||||||| |  ||||||||||||||||||| ||||||||||||    
T  50023608 ggcagttaactgccgaggggcatttagataaattacttgtgtgtctcagc 50023657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 50030726 - 50030775
Alignment:
Q  142 ggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||||||||| |  ||||||||||||||||||| ||||||||||||    
T  50030726 ggcagttaactgccgaggggcatttagataaattacttgtgtgtctcagc 50030775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 7484747 - 7484700
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    ||||||||||||||||||| |  ||||||| |||||||||||||||||    
T  7484747 aattcggcagttaactgccgaggggcatttggataaattactcgtgtg 7484700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 21294756 - 21294819
Alignment:
Q  47 ccaatcaagcatattatacta-cacaaatcttgttagcaatttgacattccacgaggagtaggt 109  Q
    |||||||||||||||||  || | |||||||||| |||||||||||||| ||| ||||||||||    
T  21294756 ccaatcaagcatattattttaacccaaatcttgtcagcaatttgacatttcacaaggagtaggt 21294819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 23221723 - 23221770
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    ||||||||||||||||||| || |||||||  ||||||||||||||||    
T  23221723 aattcggcagttaactgccgaagggcatttgaataaattactcgtgtg 23221770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 38368248 - 38368201
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    ||||||||||||||||||| || | ||||| |||||||||||||||||    
T  38368248 aattcggcagttaactgccgaaggacatttggataaattactcgtgtg 38368201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 55587375 - 55587328
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    ||||||||||||||||||| || ||||||| | |||||||||||||||    
T  55587375 aattcggcagttaactgccgaagggcatttgggtaaattactcgtgtg 55587328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 55588340 - 55588387
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    ||||||||||||||||||| || ||||||| | |||||||||||||||    
T  55588340 aattcggcagttaactgccgaagggcatttgggtaaattactcgtgtg 55588387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 28157598 - 28157544
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||||||||| |||| |  ||||||| |||||||||||||||| |||||||    
T  28157598 aattcggcagttaattgccgaggggcatttggataaattactcgtgtttctcagc 28157544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 40962971 - 40962917
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||| |||||||||  ||||||| | |||||||||||||| |||||||    
T  40962971 aattcggcagtcaactgccaaggggcatttgggtaaattactcgtgtttctcagc 40962917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 21294701 - 21294734
Alignment:
Q  13 aatattagttaccaaatcttgttagcaatttgac 46  Q
    ||||||| ||||||||||||||||||||||||||    
T  21294701 aatattatttaccaaatcttgttagcaatttgac 21294734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 37856797 - 37856846
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgt 183  Q
    |||| |||||||||||||||||||| |  |||||| ||||||||||||||    
T  37856797 aaaatttcggcagttaactgccaaaggatatttaggtaaattactcgtgt 37856846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 40061121 - 40061064
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| |||| |||||||||||| |  ||||||||| |||||||||||||||| |||||    
T  40061121 aaaacttcgacagttaactgccgaggggcatttaggtaaattactcgtgtgtttcagc 40061064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 43176681 - 43176738
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| ||||||||||||||| | || || |||||| |||||||||||||| |||||||    
T  43176681 aaaatttcggcagttaactgtcgaagggtatttaggtaaattactcgtgtttctcagc 43176738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 8111456 - 8111525
Alignment:
Q  120 agccggtttccaccaaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||||||||  ||| |||| || ||||||||| |  | |||||||||||||||||||||| |||||||    
T  8111456 agccggtttccac--aaacttcgacaattaactgccgatggacatttagataaattactcgtgtatctcagc 8111525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 35631183 - 35631131
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctca 189  Q
    ||||||||||||||||||| | |||||||| | |||||||||| ||| |||||    
T  35631183 aattcggcagttaactgccgataggcatttgggtaaattactcttgtttctca 35631131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 11197480 - 11197536
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  11197480 aaaattcgacagttaactgccgaaaggcatttaggtaaattactcgtgtgtctcagc 11197536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 38119600 - 38119545
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcag 190  Q
    |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  38119600 aaaattcgacagttaactgccaaagggtatttagataaattactcgtgtgtctcag 38119545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 47505938 - 47505995
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| ||||||| ||||||||| | ||||||||||||||||||||| |||||||||||    
T  47505938 aaaacttcggcaattaactgccgagaggcatttagataaattactcttgtgtctcagc 47505995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 38127544 - 38127598
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctca 189  Q
    |||||||| ||||||||| |||| || ||||||| ||||||||||||||||||||    
T  38127544 aaaattcgacagttaactaccaatagacatttaggtaaattactcgtgtgtctca 38127598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 6328920 - 6328974
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||||| | |  |||||||||||||||||||||  |||||||    
T  6328920 aattcggcagttaactgccgagaaacatttagataaattactcgtgcttctcagc 6328974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 18609111 - 18609057
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||| |||  ||||||| ||||||||||| |||| |||||||    
T  18609111 aattcggcagttaactgtcaaggggcattttgataaattactagtgtttctcagc 18609057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 47653760 - 47653814
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||||| | |||||||| | ||||||||| |||| |||||||    
T  47653760 aattcggcagttaactgccgagaggcatttgggtaaattacttgtgtttctcagc 47653814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 51461906 - 51461960
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||||| |  ||||||| | |||||||||||||| |||||||    
T  51461906 aattcggcagttaactgccgagtggcatttgggtaaattactcgtgtttctcagc 51461960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 21141045 - 21140988
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| |||||||||||| || | || | ||||||| ||||||||||||||||||||||    
T  21141045 aaaacttcggcagttaattgtcgaaggacatttaggtaaattactcgtgtgtctcagc 21140988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 22528656 - 22528701
Alignment:
Q  139 ttcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    ||||||||||||||||| || || |||||| |||||||||||||||    
T  22528656 ttcggcagttaactgccgaagggaatttaggtaaattactcgtgtg 22528701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 50344021 - 50344078
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| ||||||||||||||||| |   |||||||| ||||||||||| ||||||||||    
T  50344021 aaaacttcggcagttaactgccgatgagcatttaggtaaattactcgcgtgtctcagc 50344078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 24885114 - 24885060
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctca 189  Q
    ||||||||||||||| |||||||| |||||||||||||||||| |||||||||||    
T  24885114 aaaattcggcagttatctgccaaagggcatttagataaattacccgtgtgtctca 24885060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 24719956 - 24719904
Alignment:
Q  139 ttcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||| || | ||||||| ||||||| ||||||||||||||    
T  24719956 ttcggcagttaactgccgaaggacatttaggtaaattagtcgtgtgtctcagc 24719904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 456097 - 456151
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||||| |  ||||||| | |||||||||||||| |||||||    
T  456097 aattcggcagttaactgccgaggggcatttgggtaaattactcgtgtttctcagc 456151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 5197058 - 5197006
Alignment:
Q  140 tcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagcg 192  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  5197058 tcggcagttaactgccgaggggcatttagataaattactcgtgtgtctcagcg 5197006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 38971664 - 38971731
Alignment:
Q  120 agccggtttccaccaaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctca 189  Q
    |||||||||||||  ||||||||| ||||||||||| || ||||||||| ||||||| ||||||||||||    
T  38971664 agccggtttccac--aaaattcgggagttaactgccgaagggcatttaggtaaattagtcgtgtgtctca 38971731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 38408520 - 38408577
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| |||||||||||| |||| || ||||||||| ||||||||||||||||||||||    
T  38408520 aaaacttcggcagttaattgccgaagggcatttaggtaaattactcgtgtgtctcagc 38408577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 8680299 - 8680346
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    ||||||||||||||||||| || ||||||| | |||||||||||||||    
T  8680299 aattcggcagttaactgccgaagggcatttgggtaaattactcgtgtg 8680346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 5541606 - 5541653
Alignment:
Q  144 cagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  5541606 cagttaactgccaaagggcatttaggtaaattactcgtgtgtctcagc 5541653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 47521437 - 47521380
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| ||||||||||||||||| | |||||||||| |||||||||||||| |||||||    
T  47521437 aaaacttcggcagttaactgccgagaggcatttaggtaaattactcgtgtttctcagc 47521380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 19804530 - 19804599
Alignment:
Q  120 agccggtttccaccaaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||||||||  ||| |||||||||||||| || |  ||||||||| ||||||||||||||||||||||    
T  19804530 agccggtttccac--aaacttcggcagttaactaccgaggggcatttaggtaaattactcgtgtgtctcagc 19804599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 37345157 - 37345213
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||| |||||||||||| || | ||||||| ||||||||||||||||||||||    
T  37345157 aaaattcgacagttaactgccgaaggacatttaggtaaattactcgtgtgtctcagc 37345213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 41734210 - 41734154
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||| |||||||||||| || |||||||| |||||||||||||| ||||||||    
T  41734210 aaaattcgacagttaactgccgaagggcatttaaataaattactcgtgcgtctcagc 41734154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 556708 - 556755
Alignment:
Q  144 cagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||||    
T  556708 cagttaactgtcaagagacatttagataaattactcgtgtgtctcagc 556755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 12081249 - 12081303
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||| ||||||||| || ||||||| |||||||||||||||| |||||||    
T  12081249 aattcggcaattaactgccgaagggcatttggataaattactcgtgtttctcagc 12081303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 10168311 - 10168361
Alignment:
Q  133 caaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgt 183  Q
    ||||| |||||||||||||||||||| ||||||| ||||  ||||||||||    
T  10168311 caaaacttcggcagttaactgccaaagggcattttgatattttactcgtgt 10168361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 10175836 - 10175886
Alignment:
Q  133 caaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgt 183  Q
    ||||| |||||||||||||||||||| ||||||| ||||  ||||||||||    
T  10175836 caaaacttcggcagttaactgccaaagggcattttgatattttactcgtgt 10175886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 17834507 - 17834457
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    |||| ||||||||||||||||| || |||||||  ||||||||||||||||    
T  17834507 aaaacttcggcagttaactgccgaagggcattttcataaattactcgtgtg 17834457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 190
Target Start/End: Original strand, 47777531 - 47777561
Alignment:
Q  160 ggcatttagataaattactcgtgtgtctcag 190  Q
    |||||||||||||||||||||||||||||||    
T  47777531 ggcatttagataaattactcgtgtgtctcag 47777561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 48901495 - 48901549
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||||| | || ||||| | |||||||||||||| |||||||    
T  48901495 aattcggcagttaactgcctagagacatttgggtaaattactcgtgtttctcagc 48901549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 27450181 - 27450136
Alignment:
Q  145 agttaactgccaaaaggcatttagataaattactcgtgtgtctcag 190  Q
    |||||| |||| || |||||||| ||||||||||||||||||||||    
T  27450181 agttaaatgccgaagggcatttaaataaattactcgtgtgtctcag 27450136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 39491126 - 39491070
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||| |||||||||||| |||| ||||||  ||||||||||||||||||||||    
T  39491126 aaaattcgacagttaactgccgaaagacatttatgtaaattactcgtgtgtctcagc 39491070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 3695387 - 3695333
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||||| |  ||||||| |||||||||||||||| |||||||    
T  3695387 aattcggcagttaactgccgaggggcatttggataaattactcgtgtttctcagc 3695333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 22550918 - 22550968
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||||||    
T  22550918 aaaacttcggcagttaactgccgaagggcatttaggtaaattactcgtgtg 22550968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 39831176 - 39831119
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| |||||||||||||| || |  ||||||||| ||||||||||||||||||||||    
T  39831176 aaaatttcggcagttaactaccgaggggcatttaggtaaattactcgtgtgtctcagc 39831119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 7120919 - 7120863
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||| ||||||||||||| || |  ||||||||||||||||||||| |||||||    
T  7120919 aaaattcagcagttaactgccgaaggatatttagataaattactcgtgtttctcagc 7120863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 40075151 - 40075095
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||| ||||||| | || ||||||||  ||||||||||||||||||||||    
T  40075151 aaaattcggcacttaactgtcgaagggcatttaagtaaattactcgtgtgtctcagc 40075095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 3696126 - 3696173
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    ||||||||||||||||||| |  ||||||| |||||||||||||||||    
T  3696126 aattcggcagttaactgccgaggggcatttcgataaattactcgtgtg 3696173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 5532478 - 5532431
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    ||||||||||||||||||| || ||||||| | |||||||||||||||    
T  5532478 aattcggcagttaactgccgaagggcatttgggtaaattactcgtgtg 5532431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 34371899 - 34371949
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    |||| ||||||||||||||||  || ||||||||||||||||||| |||||    
T  34371899 aaaacttcggcagttaactgctgaagggcatttagataaattacttgtgtg 34371949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 41858542 - 41858488
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||| | |  ||||||| |||||||||||||||| |||||||    
T  41858542 aattcggcagttaactgtcgaggggcatttggataaattactcgtgtttctcagc 41858488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 16939400 - 16939343
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| ||| ||||||||||||| ||||| |||| | |||||||||||||| |||||||    
T  16939400 aaaatttcagcagttaactgccgaaaggtatttgggtaaattactcgtgtttctcagc 16939343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 20854637 - 20854580
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| ||||||||||||||||| |  | ||| |||||||||||||||||| |||||||    
T  20854637 aaaacttcggcagttaactgccgagggacatgtagataaattactcgtgtttctcagc 20854580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 36127392 - 36127335
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| |||| |||||||||||| | || | ||||| ||||||||||||||||||||||    
T  36127392 aaaacttcgtcagttaactgccgagagacgtttaggtaaattactcgtgtgtctcagc 36127335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 20859645 - 20859714
Alignment:
Q  120 agccggtttccaccaaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||||||||  ||| ||||||||||||||| | |  | ||||||| |||||| |||||||||||||||    
T  20859645 agccggtttccac--aaacttcggcagttaactgtcgagggacatttaggtaaattcctcgtgtgtctcagc 20859714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 18949 - 18995
Alignment:
Q  145 agttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  18949 agttaactgccaaagggcatttaggtaaattactagtgtgtctcagc 18995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 7941130 - 7941073
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| ||||||||||||||||| || || |||||| |||||||||||||| |||||||    
T  7941130 aaaatttcggcagttaactgccgaagggtatttaggtaaattactcgtgtttctcagc 7941073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 17561779 - 17561722
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| ||||||||||||||| |||  | ||||||| ||||||||||||||||||||||    
T  17561779 aaaatttcggcagttaactgtcaagggacatttaggtaaattactcgtgtgtctcagc 17561722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 41612388 - 41612331
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| |||| |||||||||||||| || ||||||  ||||||||||||||||||||||    
T  41612388 aaaacttcgacagttaactgccaatagacatttatgtaaattactcgtgtgtctcagc 41612331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 42760263 - 42760319
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||| ||||||| | | || ||||||||| ||||||||||||||||||||||    
T  42760263 aaaattcggtagttaaccggcgaagggcatttaggtaaattactcgtgtgtctcagc 42760319  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 27738625 - 27738579
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgt 183  Q
    ||||||||||||||||||| || ||||||| | ||||||||||||||    
T  27738625 aattcggcagttaactgccgaagggcatttgggtaaattactcgtgt 27738579  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 2062406 - 2062349
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| ||||||||||||||||| || || |||| |||||||||||||| | |||||||    
T  2062406 aaaacttcggcagttaactgccgaagggtatttggataaattactcgtatttctcagc 2062349  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 16861149 - 16861092
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| |||| |||||||||| | |  ||||||||| ||||||||||||||||||||||    
T  16861149 aaaacttcgacagttaactgtcgaggggcatttaggtaaattactcgtgtgtctcagc 16861092  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 17568013 - 17568070
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| |||| |||||||||||| |  | |||||||||||||||| |||||||||||||    
T  17568013 aaaatttcgacagttaactgccgagggacatttagataaattacccgtgtgtctcagc 17568070  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 48566456 - 48566508
Alignment:
Q  139 ttcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    |||| |||||||||||| ||  ||| ||||||||||||||||| |||||||||    
T  48566456 ttcgacagttaactgccgaagagcacttagataaattactcgtatgtctcagc 48566508  T

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Target: scaffold0494 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 11507 - 11557
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    |||| ||||||||||||||||| || ||||||||| ||| |||||||||||    
T  11507 aaaacttcggcagttaactgccgaagggcatttaggtaatttactcgtgtg 11557  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 20937917 - 20937867
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    |||| ||||||||||||||||| || ||||||||| ||| |||||||||||    
T  20937917 aaaacttcggcagttaactgccgaagggcatttaggtaatttactcgtgtg 20937867  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 26544045 - 26544099
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||||| | ||| |||| ||||| |||||||||| |||||||    
T  26544045 aattcggcagttaactgccgagaggtatttggataatttactcgtgtttctcagc 26544099  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 28419427 - 28419377
Alignment:
Q  134 aaaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtg 184  Q
    |||| ||||||||||||||||| || ||||||||| |||| ||||||||||    
T  28419427 aaaacttcggcagttaactgccgaagggcatttaggtaaaatactcgtgtg 28419377  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 35935234 - 35935180
Alignment:
Q  137 aattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||||||||||||| || ||||||| | ||||||||| |||| |||||||    
T  35935234 aattcggcagttaactgccgaagggcatttgggtaaattacttgtgtctctcagc 35935180  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 10334455 - 10334402
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctc 188  Q
    ||||||||||||||||||||| |  | ||||||| |||||||||| ||||||||    
T  10334455 aaaattcggcagttaactgccgatggacatttaggtaaattactcatgtgtctc 10334402  T

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Target: scaffold0192 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 18953 - 19009
Alignment:
Q  135 aaaattcggcagttaactgccaaaaggcatttagataaattactcgtgtgtctcagc 191  Q
    ||||||||| ||||||||||| | ||| |||||| ||||||||| |||| |||||||    
T  18953 aaaattcggtagttaactgccgagaggtatttaggtaaattactggtgtttctcagc 19009  T

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