View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18024_high_10 (Length: 297)
Name: NF18024_high_10
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 52811314 - 52811598
Alignment:
| Q |
1 |
agttaggaatagaaccaagttcactccaactccgaagaaagctaaagtagccagtgcttgattcactgcattgttcattcttcaaaaactcaaataaaag |
100 |
Q |
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| T |
52811314 |
agttaggaacagaaccaagttcactccaactccaaagaaagctaaagtagccagtgcttgattcactgcattgttcattcttcaaaaactcaaataaaag |
52811413 |
T |
|
| Q |
101 |
taacaaataaaaagagtttgcaatcattttagtagtagtaagtacctaacaagagggttgcaactttggttcctccttttttattctcattcgctctgcc |
200 |
Q |
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| T |
52811414 |
taacaaataaaaagagtttgcaatcattttagtagtagtaagtacctaacaagagggttgcaactttggttcctccttttttattctcattcgctctgcc |
52811513 |
T |
|
| Q |
201 |
actttcttccataacaacctcttctctgtaattctcatttccttccattttacctacctatttgtttataaagcaaatctatatt |
285 |
Q |
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| T |
52811514 |
actttcttccataacaacctcttctctgtaattctcatttccttccattttacctacctatttgtttataaagcaaatctatatt |
52811598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 396018 - 395948
Alignment:
| Q |
2 |
gttaggaatagaaccaagttcactccaactccgaagaaagctaaagtagccagtgcttgattcactgcatt |
72 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| |||| || |||||||||||||| ||||||| |
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| T |
396018 |
gttaggaacagaaccaagttcactccaactccaaagaatgctagtgttgccagtgcttgattagctgcatt |
395948 |
T |
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