View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18024_high_13 (Length: 277)
Name: NF18024_high_13
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_high_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 7224410 - 7224664
Alignment:
| Q |
1 |
atggaacaacatacttcagtgtcaaaattctctcacaagttaaatacaaaacaattataaaatcatttcataggcgaaggagactaaaatacacgattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7224410 |
atggaacaacatacttcagtgtcaaaattctctcacaagttaaatacaaaacaattataaaatcatttcagaggcgaaggagactaaaatacacgattca |
7224509 |
T |
|
| Q |
101 |
tcaaaccataaggataaaactagatgaaaaacatggtgatgaagtgatgaaacatactcctttttgaaaatctcaacaagaacttatataatggtctaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7224510 |
tcaaaccataaggataaaactagatgaaaaacatggtgatgaagtgatgaaacggactcctttttgaaaatctcaacaagaacttatataatggtctaaa |
7224609 |
T |
|
| Q |
201 |
ccctccatccccagcacttgtttctggaaataaaaaatccaagcttgcttcctag |
255 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
7224610 |
ccctccatccccagcacttgtttatggcaataaaaaacccaagcttgcttcctag |
7224664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 2918900 - 2919146
Alignment:
| Q |
10 |
catacttcagtgtcaaaattctctcacaagttaaatacaaaacaattataaaatcatttcataggcgaaggagactaaaatacacgattcatcaaaccat |
109 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||| | ||||||||| ||| |
|
|
| T |
2918900 |
catacttcagtgtcgaaattctctcacgagtcaaatacaaaa--attataaaatcctttcataggggaaggagactaaaatacatggttcatcaaaacat |
2918997 |
T |
|
| Q |
110 |
aaggat---aaaactagatgaaaaacatggtgatgaagtgatgaaacatactcctttttgaaaatctcaacaagaacttatataatggtctaaaccctcc |
206 |
Q |
| |
|
||| | |||||||||||||||||||||||||| |||| ||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||| || |
|
|
| T |
2918998 |
aagaaggtcaaaactagatgaaaaacatggtgatggagtg-tgaaacagactcctttatgaaaatctcaacaacaacttatagaatggtctaaacccccc |
2919096 |
T |
|
| Q |
207 |
atccccagcacttgtttctggaaat-aaaaaatccaagcttgcttcctag |
255 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||| ||||||||||||||||| |
|
|
| T |
2919097 |
atccccagcacttgtttttggcaataaaaaaacccaagcttgcttcctag |
2919146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University