View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18024_high_15 (Length: 248)

Name: NF18024_high_15
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18024_high_15
NF18024_high_15
[»] chr4 (19 HSPs)
chr4 (130-231)||(6165156-6165257)
chr4 (16-130)||(14032325-14032439)
chr4 (74-129)||(10094768-10094823)
chr4 (62-121)||(14109931-14109990)
chr4 (74-129)||(39480001-39480056)
chr4 (62-129)||(49243568-49243634)
chr4 (82-129)||(28803654-28803701)
chr4 (16-129)||(38054083-38054199)
chr4 (74-124)||(7413496-7413546)
chr4 (74-124)||(7459577-7459627)
chr4 (82-131)||(14191736-14191785)
chr4 (82-130)||(28142871-28142919)
chr4 (87-130)||(23935642-23935685)
chr4 (74-129)||(36214019-36214073)
chr4 (79-129)||(51890296-51890346)
chr4 (79-129)||(51890569-51890619)
chr4 (83-129)||(56366419-56366465)
chr4 (83-124)||(41508856-41508897)
chr4 (79-115)||(51315451-51315487)
[»] chr2 (19 HSPs)
chr2 (16-129)||(38698734-38698847)
chr2 (16-129)||(18580962-18581077)
chr2 (74-136)||(22575725-22575787)
chr2 (74-129)||(27861586-27861641)
chr2 (74-131)||(7444211-7444268)
chr2 (69-129)||(41302039-41302099)
chr2 (74-129)||(19686093-19686148)
chr2 (80-129)||(2554364-2554413)
chr2 (80-129)||(41825711-41825760)
chr2 (82-130)||(2566228-2566276)
chr2 (77-129)||(44313791-44313843)
chr2 (74-124)||(33014946-33014996)
chr2 (82-130)||(45276925-45276973)
chr2 (82-129)||(18780597-18780644)
chr2 (74-129)||(29303788-29303843)
chr2 (76-131)||(30434720-30434775)
chr2 (82-131)||(30387378-30387427)
chr2 (93-129)||(24484950-24484986)
chr2 (81-121)||(38565828-38565868)
[»] chr7 (17 HSPs)
chr7 (16-131)||(15678510-15678625)
chr7 (16-129)||(12383030-12383146)
chr7 (74-129)||(8389043-8389098)
chr7 (74-131)||(23305947-23306004)
chr7 (74-131)||(31072270-31072327)
chr7 (79-131)||(1623837-1623889)
chr7 (62-130)||(10699547-10699615)
chr7 (79-131)||(18667671-18667723)
chr7 (82-130)||(6188830-6188878)
chr7 (82-130)||(6195346-6195394)
chr7 (16-48)||(10699498-10699530)
chr7 (80-130)||(20394533-20394583)
chr7 (83-129)||(37548315-37548361)
chr7 (82-131)||(8113250-8113299)
chr7 (82-131)||(48239081-48239130)
chr7 (82-130)||(8070204-8070252)
chr7 (69-129)||(35477724-35477783)
[»] chr1 (18 HSPs)
chr1 (16-131)||(33048685-33048799)
chr1 (16-131)||(32175697-32175813)
chr1 (62-129)||(9371553-9371620)
chr1 (80-129)||(23663857-23663906)
chr1 (62-126)||(1345793-1345857)
chr1 (74-129)||(8737649-8737704)
chr1 (74-129)||(48999703-48999758)
chr1 (72-130)||(26465364-26465422)
chr1 (74-121)||(17967080-17967127)
chr1 (80-129)||(25095475-25095524)
chr1 (74-130)||(21906680-21906736)
chr1 (82-130)||(27430544-27430592)
chr1 (82-129)||(26222317-26222364)
chr1 (82-124)||(5049763-5049805)
chr1 (83-129)||(22070811-22070857)
chr1 (16-46)||(1345940-1345970)
chr1 (87-125)||(9023742-9023780)
chr1 (74-131)||(48596096-48596153)
[»] chr5 (13 HSPs)
chr5 (16-124)||(41871343-41871453)
chr5 (74-129)||(42879894-42879949)
chr5 (74-130)||(2677267-2677323)
chr5 (74-129)||(13382348-13382403)
chr5 (82-128)||(5578358-5578404)
chr5 (79-129)||(13490685-13490735)
chr5 (77-125)||(9409314-9409362)
chr5 (74-129)||(23963150-23963205)
chr5 (79-129)||(38915380-38915430)
chr5 (83-130)||(39537163-39537210)
chr5 (80-126)||(6769104-6769150)
chr5 (72-129)||(32699263-32699319)
chr5 (82-127)||(38491671-38491716)
[»] chr3 (18 HSPs)
chr3 (16-129)||(1418207-1418321)
chr3 (16-125)||(30378846-30378956)
chr3 (73-130)||(36641824-36641881)
chr3 (73-129)||(22918431-22918487)
chr3 (82-132)||(10993907-10993957)
chr3 (80-130)||(25071948-25071998)
chr3 (79-129)||(27941264-27941314)
chr3 (82-129)||(6024178-6024225)
chr3 (92-130)||(10991142-10991180)
chr3 (79-128)||(11830148-11830197)
chr3 (79-131)||(1425063-1425115)
chr3 (16-48)||(27533159-27533191)
chr3 (74-129)||(15761159-15761214)
chr3 (74-129)||(19157394-19157449)
chr3 (74-129)||(52448443-52448498)
chr3 (64-129)||(29714255-29714318)
chr3 (74-123)||(33100186-33100235)
chr3 (82-131)||(40145784-40145833)
[»] scaffold0311 (1 HSPs)
scaffold0311 (73-129)||(4570-4626)
[»] chr6 (16 HSPs)
chr6 (73-129)||(31473854-31473910)
chr6 (74-130)||(34043845-34043901)
chr6 (83-130)||(1423264-1423311)
chr6 (74-129)||(1603672-1603727)
chr6 (83-123)||(18617311-18617351)
chr6 (74-130)||(20990740-20990796)
chr6 (77-129)||(22011864-22011916)
chr6 (62-122)||(29530740-29530800)
chr6 (69-128)||(31130229-31130288)
chr6 (76-126)||(15060446-15060496)
chr6 (83-129)||(18675662-18675708)
chr6 (80-129)||(21442889-21442938)
chr6 (16-45)||(31473933-31473962)
chr6 (69-113)||(14678726-14678770)
chr6 (16-52)||(18617243-18617279)
chr6 (16-52)||(29530815-29530851)
[»] chr8 (12 HSPs)
chr8 (74-129)||(7972731-7972786)
chr8 (74-130)||(1981885-1981941)
chr8 (69-132)||(9137984-9138047)
chr8 (76-129)||(16730032-16730085)
chr8 (76-129)||(40971729-40971782)
chr8 (82-129)||(45117764-45117811)
chr8 (80-124)||(31597829-31597873)
chr8 (82-124)||(3762992-3763034)
chr8 (82-131)||(28517091-28517140)
chr8 (82-129)||(6926981-6927028)
chr8 (74-129)||(7263401-7263456)
chr8 (82-126)||(2878632-2878676)
[»] scaffold0093 (1 HSPs)
scaffold0093 (74-124)||(51148-51198)


Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 6165257 - 6165156
Alignment:
Q  130 atgggtgatttttaaaagttgaaaaatgaccatccatctcttgtgaatgagcatattgctatccaagtatttaaatcggatgaattttgctagttgtgaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6165257 atgggtgatttttaaaagttgaaaaatgaccatccatctcttgtgaatgagcatattgctatccaagtattcaaatcggatgaattttgctagttgtgaa 6165158  T
Q  230 gt 231  Q
    ||    
T  6165157 gt 6165156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 14032439 - 14032325
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaagnnnnnnnnntgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaactc 115  Q
    |||||||||||||||||||||||||||||||||||||         |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  14032439 ataactaatacatgtctcattcatcatttatcagaagaaaaaaatatgatgtaatacaaagggcccttttttcatactatgcctaaggcccgtaaaactc 14032340  T
Q  116 taggaacggccctga 130  Q
    |||||||||||||||    
T  14032339 taggaacggccctga 14032325  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 10094823 - 10094768
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  10094823 aagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 10094768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 14109931 - 14109990
Alignment:
Q  62 tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaa 121  Q
    |||| ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  14109931 tgatgtaatataaagagcccttttttgatactatgcctaaggcccgtaaaactctaggaa 14109990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 39480056 - 39480001
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||    
T  39480056 aaggacccttttttcatattatgcctaaggcccataaaactctaggaacgaccctg 39480001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 49243568 - 49243634
Alignment:
Q  62 tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  49243568 tgatgtaatataaatggcccttttta-atactatgcctaaggcccgtaaaactctaggaacggccctg 49243634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 28803701 - 28803654
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  28803701 ttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 28803654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 38054083 - 38054199
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaagnnnnnnnnntgata---taatataaaggacccttttttcatactatgcctaaggcccgtaaaa 112  Q
    ||||| |||||||||||||||||||||||||||||||         | ||    ||||| ||||| |||||||||||||||||  | |||||| ||||||    
T  38054083 ataaccaatacatgtctcattcatcatttatcagaagaaaaaaaaattattatgtaatacaaagggcccttttttcatactatatccaaggcctgtaaaa 38054182  T
Q  113 ctctaggaacggccctg 129  Q
    |||||||||||||||||    
T  38054183 ctctaggaacggccctg 38054199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 7413546 - 7413496
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacgg 124  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  7413546 aagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgg 7413496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 7459627 - 7459577
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacgg 124  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  7459627 aagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgg 7459577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 14191785 - 14191736
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||||||| |||||||||||||||| |||||| |||||||||||||||||    
T  14191785 ttttttcaaactatgcctaaggcccttaaaacgctaggaacggccctgat 14191736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 28142919 - 28142871
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||||| |||||||||||||||| | |||| ||||||||||||||||    
T  28142919 ttttttcaaactatgcctaaggccccttaaacgctaggaacggccctga 28142871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 23935685 - 23935642
Alignment:
Q  87 tcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||    
T  23935685 tcatattatgtctaaggcccgtaaaactctaggaacggtcctga 23935642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 36214019 - 36214073
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| |||| | |||| |||||||||||||||||||||||||    
T  36214019 aagggcccttttttcatattatgtc-aaggtccgtaaaactctaggaacggccctg 36214073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 51890346 - 51890296
Alignment:
Q  79 cccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||||| ||||| |||||| ||||||| |||||||||||||| |||||||    
T  51890346 cccttttatcatattatgcccaaggcccctaaaactctaggaatggccctg 51890296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 51890619 - 51890569
Alignment:
Q  79 cccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||||| ||||| |||||| ||||||| |||||||||||||| |||||||    
T  51890619 cccttttatcatattatgcccaaggcccctaaaactctaggaatggccctg 51890569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 56366465 - 56366419
Alignment:
Q  83 tttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||| ||||||||||||||| |||||  |||||||||||||||    
T  56366465 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 56366419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 41508897 - 41508856
Alignment:
Q  83 tttttcatactatgcctaaggcccgtaaaactctaggaacgg 124  Q
    ||||||||| ||||||||||| | ||||||||||||||||||    
T  41508897 tttttcatattatgcctaaggtctgtaaaactctaggaacgg 41508856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 51315451 - 51315487
Alignment:
Q  79 cccttttttcatactatgcctaaggcccgtaaaactc 115  Q
    |||||||||||||||||||||||  ||||||||||||    
T  51315451 cccttttttcatactatgcctaacacccgtaaaactc 51315487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 38698734 - 38698847
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaagnnnnnnnnntgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaactc 115  Q
    |||||||||||||||||||||||||||||||||||||         |||| ||||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  38698734 ataactaatacatgtctcattcatcatttatcagaagaaaaaaaaatgatgtaatacaaagggcccttttttcatactatgcctaaggcctgtaaaactc 38698833  T
Q  116 taggaacggccctg 129  Q
    ||||||||||||||    
T  38698834 taggaacggccctg 38698847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 18581077 - 18580962
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaagnnnnnnnnn--tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaac 113  Q
    |||||||||||||||||||||||||||||||||||||           |||| ||||| ||||| ||||||||||||||||||||||||||| |||||||    
T  18581077 ataactaatacatgtctcattcatcatttatcagaagaagaaaaaaaatgatgtaatacaaagggcccttttttcatactatgcctaaggcctgtaaaac 18580978  T
Q  114 tctaggaacggccctg 129  Q
    ||||||||||||||||    
T  18580977 tctaggaacggccctg 18580962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 22575787 - 22575725
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgatgggtg 136  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  22575787 aagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctgattggtg 22575725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 27861641 - 27861586
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27861641 aagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctg 27861586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 7444211 - 7444268
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  7444211 aagggcccttttttcatattatgcctaagacccgtaaaactctaggaacggccctgat 7444268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 41302099 - 41302039
Alignment:
Q  69 atataaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  41302099 atataaggggcccttttctcatattatgcctaaggcccgtaaaactctaggaacggccctg 41302039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 19686093 - 19686148
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  19686093 aagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 19686148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 2554364 - 2554413
Alignment:
Q  80 ccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  2554364 ccttttttcatattatgcctaaggtccgtaaaacgctaggaacggccctg 2554413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 41825760 - 41825711
Alignment:
Q  80 ccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  41825760 ccttttttcatattatgcctaaggtccgtaaaacgctaggaacggccctg 41825711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 2566228 - 2566276
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  2566228 ttttttcaaactatgcctaaggcccttaaaacgctaggaacggccctga 2566276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 44313843 - 44313791
Alignment:
Q  77 gacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||    
T  44313843 gaccctttttttatattatgtctaaggcccgtaaaactctaggaacgggcctg 44313791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 33014996 - 33014946
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacgg 124  Q
    |||| ||||||||||||| ||||| |||| |||||||||||||||||||||    
T  33014996 aagggcccttttttcatattatgcataagacccgtaaaactctaggaacgg 33014946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 45276973 - 45276925
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||||| |||||||||||||||| | |||| ||||||||||||||||    
T  45276973 ttttttcaaactatgcctaaggccccttaaacgctaggaacggccctga 45276925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 18780644 - 18780597
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||| |||||||||||||||| |||||| |||||||| ||||||    
T  18780644 ttttttcaaactatgcctaaggcccttaaaacgctaggaacagccctg 18780597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 29303788 - 29303843
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||| ||| |||||||||||||||| | |||| |||||||||||||||    
T  29303788 aagggcccttttgtcaaactatgcctaaggccccttaaacgctaggaacggccctg 29303843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 30434775 - 30434720
Alignment:
Q  76 ggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    ||||| |||| |||||||||| ||||| || | |||||||||||||||||||||||    
T  30434775 ggaccattttctcatactatgtctaagacctgcaaaactctaggaacggccctgat 30434720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 30387378 - 30387427
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||| ||||| |||||||||| |||| ||||||||||||||| |||||||    
T  30387378 ttttctcatattatgcctaagacccgaaaaactctaggaacgaccctgat 30387427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 24484950 - 24484986
Alignment:
Q  93 tatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  24484950 tatgcctaaagcccataaaactctaggaacggccctg 24484986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 38565868 - 38565828
Alignment:
Q  81 cttttttcatactatgcctaaggcccgtaaaactctaggaa 121  Q
    ||||| ||||| |||||||||| ||||||||||||||||||    
T  38565868 cttttctcatattatgcctaagacccgtaaaactctaggaa 38565828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 15678625 - 15678510
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaagnnnnnnnnntgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaactc 115  Q
    ||||||||||||||||||||| |||||||||||||||         |||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  15678625 ataactaatacatgtctcatttatcatttatcagaagaagaaaaaatgatgtaatacaaagggcccttttttcatactatgcctaagacccgtaaaactc 15678526  T
Q  116 taggaacggccctgat 131  Q
    ||||||||||||||||    
T  15678525 taggaacggccctgat 15678510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 12383030 - 12383146
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaagnnnnnnnnn---tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaa 112  Q
    ||||||||||||||||||||||||| |||||||||||            |||| ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  12383030 ataactaatacatgtctcattcatcgtttatcagaagaaaaaaaaaatatgatgtaatacaaagggcccttttttcatactatgcctaaggcccgtaaaa 12383129  T
Q  113 ctctaggaacggccctg 129  Q
    |||||||||||||||||    
T  12383130 ctctaggaacggccctg 12383146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 8389098 - 8389043
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  8389098 aagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 8389043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 23305947 - 23306004
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||||||||||||||| |||||||||||| ||| |||||| |||||||||||||||||    
T  23305947 aaggacccttttttcaaactatgcctaagacccttaaaacgctaggaacggccctgat 23306004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 31072327 - 31072270
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  31072327 aagggcccttttttcatattatgcctaaggcccataaaactctaggaacgggcctgat 31072270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 1623837 - 1623889
Alignment:
Q  79 cccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  1623837 cccttttttcatattatgcctaaggtccgtaaaactctaggaacgggcctgat 1623889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 10699547 - 10699615
Alignment:
Q  62 tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||| ||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||| || ||||||    
T  10699547 tgatgtaatacaaatgacccttttttcatactatgcgtaaggctcgtaaaactctaggaccgaccctga 10699615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 18667671 - 18667723
Alignment:
Q  79 cccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||| |||| ||| ||||||||||||||||||||| |||||||||||||||||    
T  18667671 ccctatttttatattatgcctaaggcccgtaaaacactaggaacggccctgat 18667723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 6188878 - 6188830
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||||| |||||||||||||||| | |||| ||||||||||||||||    
T  6188878 ttttttcaaactatgcctaaggccccttaaacgctaggaacggccctga 6188830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 6195394 - 6195346
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||||| |||||||||||||||| | |||| ||||||||||||||||    
T  6195394 ttttttcaaactatgcctaaggccccttaaacgctaggaacggccctga 6195346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 10699498 - 10699530
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatca 48  Q
    |||||||||||||||||||||||||||||||||    
T  10699498 ataactaatacatgtctcattcatcatttatca 10699530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 20394583 - 20394533
Alignment:
Q  80 ccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||||| ||| ||||| |||||||||||||||| || ||||||||||||    
T  20394583 cctttttttatattatgcataaggcccgtaaaactttaagaacggccctga 20394533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 37548361 - 37548315
Alignment:
Q  83 tttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||| ||||||||||||||| |||||  |||||||||||||||    
T  37548361 tttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 37548315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 8113299 - 8113250
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||| ||||| |||| ||||| ||| ||||||||||||||||||||||||    
T  8113299 ttttctcatattatgtctaagacccctaaaactctaggaacggccctgat 8113250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 48239081 - 48239130
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||||||| |||||||||||||||| | |||| ||||||||| |||||||    
T  48239081 ttttttcaaactatgcctaaggccccttaaacgctaggaacgaccctgat 48239130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 8070204 - 8070252
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||||| |||||||||||||||| | |||| ||||||| ||||||||    
T  8070204 ttttttcaaactatgcctaaggccccttaaacgctaggaatggccctga 8070252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 35477783 - 35477724
Alignment:
Q  69 atataaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||||||| |||| |||| ||| ||||| ||||| ||||||||| |||||||||||||||    
T  35477783 atataaagg-ccctatttttatattatgcataaggtccgtaaaacgctaggaacggccctg 35477724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 33048799 - 33048685
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaagnnnnnnnnntgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaactc 115  Q
    ||||||||| ||||| |||||||||||||||||||||         ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  33048799 ataactaatgcatgtatcattcatcatttatcagaagaaaaaaatatgataaaatataaaggacccttttt-catactatgcctaagacccgtaaaactc 33048701  T
Q  116 taggaacggccctgat 131  Q
    ||||||||||||||||    
T  33048700 taggaacggccctgat 33048685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 32175813 - 32175697
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaagnnnnnnnnn-tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaact 114  Q
    |||||||||||||||||||||||||||||||| ||||          |||| ||||| ||| | |||||||||||||||||||| ||| |||||||||||    
T  32175813 ataactaatacatgtctcattcatcatttatcggaagaaaagaaaaatgatgtaatacaaatggcccttttttcatactatgcccaagacccgtaaaact 32175714  T
Q  115 ctaggaacggccctgat 131  Q
    |||||||||||||||||    
T  32175713 ctaggaacggccctgat 32175697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 9371620 - 9371553
Alignment:
Q  62 tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  9371620 tgatgtaatacaaagggcccttttttcatactatgcctaagacccgtaaaactttaggaacggccctg 9371553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 23663906 - 23663857
Alignment:
Q  80 ccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23663906 ccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctg 23663857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 1345857 - 1345793
Alignment:
Q  62 tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggcc 126  Q
    |||||||||| ||| | ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  1345857 tgatataatacaaatggcccttttttcatactatgcctaaggcctgtaaaactttaggaacggcc 1345793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 8737704 - 8737649
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  8737704 aagggcccttttttcatattatgcctaaggcccgtaaaactctagaaacggccctg 8737649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 48999703 - 48999758
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  48999703 aagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 48999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 26465364 - 26465422
Alignment:
Q  72 taaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||| || |||||||||| |||||||||||||||||||||||||||||||| |||||    
T  26465364 taaaggccctttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctga 26465422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 17967127 - 17967080
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaa 121  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  17967127 aaggatccttttttcatattatgcctaaggcccgtaaaactctaggaa 17967080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 25095475 - 25095524
Alignment:
Q  80 ccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| |||||    
T  25095475 ccttctttcatattatgcctaaggcccgtaaaactctaggaacgaccctg 25095524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 21906680 - 21906736
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||| ||||||||||||| |||||||||||||| ||||| ||||||||||| |||||    
T  21906680 aagggcccttttttcatattatgcctaaggcccataaaattctaggaacggacctga 21906736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 27430592 - 27430544
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||||||| ||||||||||||| |||||||||||||||||| |||||    
T  27430592 ttttttcatattatgcctaaggcctgtaaaactctaggaacgggcctga 27430544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 26222317 - 26222364
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||| |||||||||||||||| |||||| |||||||||||||||    
T  26222317 ttttttcaaactatgcctaaggcccttaaaacgctaggaacggccctg 26222364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 5049763 - 5049805
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacgg 124  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  5049763 ttttttcatattatgcctagggcccgtaaaactctaggaacgg 5049805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 22070811 - 22070857
Alignment:
Q  83 tttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||||  ||||||||||||||||||||||||||||||| ||||    
T  22070811 tttttcatataatgcctaaggcccgtaaaactctaggaacgggcctg 22070857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 1345970 - 1345940
Alignment:
Q  16 ataactaatacatgtctcattcatcatttat 46  Q
    |||||||||||||||||||||||||||||||    
T  1345970 ataactaatacatgtctcattcatcatttat 1345940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 9023742 - 9023780
Alignment:
Q  87 tcatactatgcctaaggcccgtaaaactctaggaacggc 125  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  9023742 tcatattatgcctaaggtccgtaaaactctaggaacggc 9023780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 48596153 - 48596096
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||| ||||||||  ||| |||||||||| ||||||||||||||||| ||| ||||||    
T  48596153 aagggccctttttctatattatgcctaagacccgtaaaactctaggaccgggcctgat 48596096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 41871343 - 41871453
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaagnnnnnnnnn--tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaac 113  Q
    |||||||||||||||||||||||||||||||||||||           |||| ||||| ||||||||||||||||||||||||||||||||| |||||||    
T  41871343 ataactaatacatgtctcattcatcatttatcagaagaagaaaaaaaatgatgtaatacaaaggacccttttttcatactatgcctaaggcctgtaaaac 41871442  T
Q  114 tctaggaacgg 124  Q
    |||||||||||    
T  41871443 tctaggaacgg 41871453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 42879894 - 42879949
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42879894 aagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccctg 42879949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 2677267 - 2677323
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  2677267 aagggccctttttttatattatgcctaaggcccgtaaaactctaggaacgggcctga 2677323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 13382403 - 13382348
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  13382403 aagggcccttttttcatattatgcctaaggcctgtaaaactctaggaacgggcctg 13382348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 5578404 - 5578358
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccct 128  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  5578404 ttttttcatattatgcttaaggcccgtaaaactctaggaacggccct 5578358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 13490685 - 13490735
Alignment:
Q  79 cccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  13490685 cccttttttcatattatgcctaaggcctgtaaaactctagaaacggccctg 13490735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 9409362 - 9409314
Alignment:
Q  77 gacccttttttcatactatgcctaaggcccgtaaaactctaggaacggc 125  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  9409362 gacccttttttcatattatgcctaagacccataaaactctaggaacggc 9409314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 23963150 - 23963205
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| |||||||||||||  ||||||||||||||||| ||||    
T  23963150 aagggcccttttttcatattatgcctaaggcctataaaactctaggaacgggcctg 23963205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 38915430 - 38915380
Alignment:
Q  79 cccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||| ||||||  |||||||||||| |||||||||||||||||||||||    
T  38915430 ccctttattcatatcatgcctaaggcctgtaaaactctaggaacggccctg 38915380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 39537210 - 39537163
Alignment:
Q  83 tttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    ||||||||| ||||| ||||||| | ||||||||||||||||||||||    
T  39537210 tttttcatattatgcataaggcctgcaaaactctaggaacggccctga 39537163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 6769150 - 6769104
Alignment:
Q  80 ccttttttcatactatgcctaaggcccgtaaaactctaggaacggcc 126  Q
    |||||| ||||| ||||| ||||||| ||||||||||||||||||||    
T  6769150 ccttttctcatattatgcttaaggcctgtaaaactctaggaacggcc 6769104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 32699263 - 32699319
Alignment:
Q  72 taaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||||||||||||| ||| ||||||||||||||| |||||  |||||||||| ||||    
T  32699263 taaaggacccttttt-cattctatgcctaaggcccctaaaatactaggaacggtcctg 32699319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 38491671 - 38491716
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccc 127  Q
    |||||||| |||||||||||||||| | |||| |||||||||||||    
T  38491671 ttttttcaaactatgcctaaggccccttaaacgctaggaacggccc 38491716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 1418321 - 1418207
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaagnnnnnnnnn-tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaact 114  Q
    |||||||||||||||||||||||||||||||||||||          |||| ||||| ||||| ||||||||||||| ||||||||||||| ||||||||    
T  1418321 ataactaatacatgtctcattcatcatttatcagaagaaaaaaaaaatgatgtaatacaaagggcccttttttcatattatgcctaaggcctgtaaaact 1418222  T
Q  115 ctaggaacggccctg 129  Q
    |||||||||||||||    
T  1418221 ctaggaacggccctg 1418207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 30378846 - 30378956
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaagnnnnnnnnn-tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaact 114  Q
    |||||||||||||||||||||||||||||||||||||          |||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||    
T  30378846 ataactaatacatgtctcattcatcatttatcagaagaaaaaaaaaatgatgtaatacaaagggcccttttttcatactatgcctaaggcctgtaaaact 30378945  T
Q  115 ctaggaacggc 125  Q
    |||||||||||    
T  30378946 ctaggaacggc 30378956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 36641824 - 36641881
Alignment:
Q  73 aaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36641824 aaagggcccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 36641881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 22918431 - 22918487
Alignment:
Q  73 aaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22918431 aaagggcccttttttcatactatgcctaaggcctgtaaaactctaggaacggccctg 22918487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 10993957 - 10993907
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgatg 132  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  10993957 ttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctgatg 10993907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 25071948 - 25071998
Alignment:
Q  80 ccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  25071948 ccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctga 25071998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 27941314 - 27941264
Alignment:
Q  79 cccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  27941314 cccttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 27941264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 6024225 - 6024178
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||| |||||||||||||||| |||||| |||||||||||||||    
T  6024225 ttttttcaaactatgcctaaggcccttaaaacgctaggaacggccctg 6024178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 10991180 - 10991142
Alignment:
Q  92 ctatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  10991180 ctatgcctaaggcccgtaaaactctaggaatggccctga 10991142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 11830197 - 11830148
Alignment:
Q  79 cccttttttcatactatgcctaaggcccgtaaaactctaggaacggccct 128  Q
    ||||||| ||||| ||||||||||| | ||||||||||||||||||||||    
T  11830197 cccttttctcatattatgcctaaggtctgtaaaactctaggaacggccct 11830148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 1425063 - 1425115
Alignment:
Q  79 cccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||||| ||||||  ||||||||||||  ||||||||||||||||||||||||    
T  1425063 ccctttattcatatcatgcctaaggcctataaaactctaggaacggccctgat 1425115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 27533191 - 27533159
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatca 48  Q
    |||||||||||||||||||||||||||||||||    
T  27533191 ataactaatacatgtctcattcatcatttatca 27533159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 15761159 - 15761214
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| ||||| ||||| | |||||||||||||||||| ||||    
T  15761159 aagggcccttttttcatattatgcttaaggtctgtaaaactctaggaacgggcctg 15761214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 19157394 - 19157449
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||||||| ||| | ||||||||||| |||||||||||||| ||||    
T  19157394 aagggcccttttttcatattatacttaaggcccgtagaactctaggaacgggcctg 19157449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 52448443 - 52448498
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| |||| |||| ||| |||||||||||||||||| || |||||||||||||||    
T  52448443 aagggccctatttttatattatgcctaaggcccgtaatacgctaggaacggccctg 52448498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 29714255 - 29714318
Alignment:
Q  64 atataatataaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| |||||| ||||||||| | |||| |||||||||||||||||||||| || |||||||||||    
T  29714255 atattatataagggaccctttct-catattatgcctaaggcccgtaaaacttta-gaacggccctg 29714318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 33100235 - 33100186
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacg 123  Q
    |||| ||||||| ||||| |||||||||| || |||||||||||||||||    
T  33100235 aaggccccttttctcatattatgcctaagacctgtaaaactctaggaacg 33100186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 40145784 - 40145833
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||| ||||| |||||||||| || |||||||||||||||| ||||||||    
T  40145784 ttttctcatattatgcctaagacctgtaaaactctaggaacagccctgat 40145833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 4626 - 4570
Alignment:
Q  73 aaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4626 aaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 4570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 31473910 - 31473854
Alignment:
Q  73 aaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31473910 aaagggcccttttttcatactatgcctaaggcctgtaaaactctaggaacggccctg 31473854  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 34043845 - 34043901
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  34043845 aagggcccttttttcatattatgcgtaaggcccgtaaaactctaggaacgggcctga 34043901  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 1423264 - 1423311
Alignment:
Q  83 tttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1423264 tttttcatattatgcctaaggctcgtaaaactctaggaacggccctga 1423311  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 1603672 - 1603727
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  1603672 aagggccctttttttatattatgcctaaggcccgtaaaactctaggaacgggcctg 1603727  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 18617311 - 18617351
Alignment:
Q  83 tttttcatactatgcctaaggcccgtaaaactctaggaacg 123  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  18617311 tttttcatgctatgcctaaggcccgtaaaactctaggaacg 18617351  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 20990740 - 20990796
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||| |||| |||| ||| ||||||||||||||||||||| ||||||||||||||||    
T  20990740 aagggccctatttttatattatgcctaaggcccgtaaaacgctaggaacggccctga 20990796  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 22011916 - 22011864
Alignment:
Q  77 gacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||    
T  22011916 gaccctttttttatattatgtctaaggcccgtaaaactctaggaacgggcctg 22011864  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 29530800 - 29530740
Alignment:
Q  62 tgatataatataaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaac 122  Q
    |||| ||||| ||||| | ||||||| ||||| |||||||||||||||||||| |||||||    
T  29530800 tgatgtaatacaaagggctcttttttgatactctgcctaaggcccgtaaaactttaggaac 29530740  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 31130229 - 31130288
Alignment:
Q  69 atataaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccct 128  Q
    |||||| ||||| |||| ||||| ||||||||||  ||||||||||||| ||||||||||    
T  31130229 atataagggaccattttctcatattatgcctaagatccgtaaaactctaagaacggccct 31130288  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 15060446 - 15060496
Alignment:
Q  76 ggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggcc 126  Q
    |||||||||| ||||| ||||| |||||||| ||||||| |||||||||||    
T  15060446 ggacccttttctcatattatgcataaggcccataaaactttaggaacggcc 15060496  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 18675662 - 18675708
Alignment:
Q  83 tttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| ||||    
T  18675662 tttttcatattatgcttaaggcccataaaactctaggaacggtcctg 18675708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 21442889 - 21442938
Alignment:
Q  80 ccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||||||| |||||||||| | | ||||||||||||||||| ||||    
T  21442889 ccttttttcatattatgcctaagactcataaaactctaggaacgggcctg 21442938  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 31473962 - 31473933
Alignment:
Q  16 ataactaatacatgtctcattcatcattta 45  Q
    ||||||||||||||||||||||||||||||    
T  31473962 ataactaatacatgtctcattcatcattta 31473933  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 14678770 - 14678726
Alignment:
Q  69 atataaaggacccttttttcatactatgcctaaggcccgtaaaac 113  Q
    |||||| ||||| |||||||||| |||| ||||||||||||||||    
T  14678770 atataagggaccattttttcatattatgtctaaggcccgtaaaac 14678726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 18617243 - 18617279
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaag 52  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  18617243 ataactaatgcatgtctcattcatcatttattagaag 18617279  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 29530851 - 29530815
Alignment:
Q  16 ataactaatacatgtctcattcatcatttatcagaag 52  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  29530851 ataacaaatacatgtctcattcattatttatcagaag 29530815  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 7972786 - 7972731
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  7972786 aaggacccttttttcatattatgcctaaggcccataaaactctaggaacggccctg 7972731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 1981885 - 1981941
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctga 130  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||    
T  1981885 aaggacccttttttcatattatgtctaaggcccgtaaaactctaggaacgggcctga 1981941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 9137984 - 9138047
Alignment:
Q  69 atataaaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgatg 132  Q
    |||||| || ||||||||||||| |||||||||||||||||||| |||||||| ||||||||||    
T  9137984 atataaggggcccttttttcatattatgcctaaggcccgtaaaattctaggaatggccctgatg 9138047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 16730032 - 16730085
Alignment:
Q  76 ggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||    
T  16730032 ggacctttttttcatattatgcctaaggcccgtaaaactctaggaacgaccctg 16730085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 40971729 - 40971782
Alignment:
Q  76 ggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  40971729 ggacccttttttcatattatgcctaaggcccgtaaaatgctaggaacggccctg 40971782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 45117764 - 45117811
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  45117764 ttttttcatattatgcctaaggcccgtaaaactctaggaacgggcctg 45117811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 31597829 - 31597873
Alignment:
Q  80 ccttttttcatactatgcctaaggcccgtaaaactctaggaacgg 124  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  31597829 ccttttttcatattatgcctaaggcctgtaaaactctaggaacgg 31597873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 3762992 - 3763034
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacgg 124  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  3762992 ttttttcatattatgcctaaggcccgtaaaactctaggcacgg 3763034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 28517091 - 28517140
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctgat 131  Q
    |||||||| |||||||||||||||| | |||| |||||||||||||||||    
T  28517091 ttttttcaaactatgcctaaggccccttaaacgctaggaacggccctgat 28517140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 6927028 - 6926981
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||||||| |||||||||||||||| | |||| |||||||||||||||    
T  6927028 ttttttcaaactatgcctaaggccccttaaacgctaggaacggccctg 6926981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 7263456 - 7263401
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacggccctg 129  Q
    |||| |||| |||| ||| ||||| ||||||||||||||| |||||||||||||||    
T  7263456 aagggccctatttttatattatgcataaggcccgtaaaacgctaggaacggccctg 7263401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 2878676 - 2878632
Alignment:
Q  82 ttttttcatactatgcctaaggcccgtaaaactctaggaacggcc 126  Q
    |||||||| |||||||||||| ||| |||||| ||||||||||||    
T  2878676 ttttttcaaactatgcctaagacccttaaaacgctaggaacggcc 2878632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 51148 - 51198
Alignment:
Q  74 aaggacccttttttcatactatgcctaaggcccgtaaaactctaggaacgg 124  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  51148 aagggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 51198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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