View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18024_high_19 (Length: 232)

Name: NF18024_high_19
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18024_high_19
NF18024_high_19
[»] chr4 (2 HSPs)
chr4 (23-99)||(24269672-24269748)
chr4 (167-214)||(24269832-24269879)
[»] chr6 (2 HSPs)
chr6 (23-99)||(13604690-13604766)
chr6 (169-214)||(13604541-13604586)
[»] chr7 (1 HSPs)
chr7 (167-212)||(8945204-8945250)
[»] chr3 (1 HSPs)
chr3 (167-212)||(51856018-51856064)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 24269672 - 24269748
Alignment:
Q  23 aatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcacctatacacaattcaacttaagt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24269672 aatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcacctatacacaattcaacttaagt 24269748  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 24269832 - 24269879
Alignment:
Q  167 cctgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24269832 cctgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcat 24269879  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 13604766 - 13604690
Alignment:
Q  23 aatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcacctatacacaattcaacttaagt 99  Q
    |||||||||| |||||||||||||| ||||| ||||||||  |||||||||||||||||||||||||| ||||||||    
T  13604766 aatcaacaatcttctctcttgcatcaccccaatataccttagccaccacagtcacctatacacaattcgacttaagt 13604690  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 13604586 - 13604541
Alignment:
Q  169 tgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcat 214  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  13604586 tgtttctatctagaagcagtatcaagtatgtccaaaacctcagcat 13604541  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 8945204 - 8945250
Alignment:
Q  167 cctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagc 212  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  8945204 cctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagc 8945250  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 51856018 - 51856064
Alignment:
Q  167 cctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagc 212  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  51856018 cctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagc 51856064  T

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