View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18024_high_2 (Length: 519)
Name: NF18024_high_2
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 44575841 - 44575338
Alignment:
| Q |
1 |
gcagcatgtcgaaaacgcaaacttcagctttcaaatagaactttatatgatcatgtttctacattgtcagaatcagaaaacattaggcttgttcaaacag |
100 |
Q |
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| T |
44575841 |
gcagcatgtcgaaaacgcaaacttcagctttcaaatagaactttatatgatcatgtttctacattgtcagaatcagaaaacattaggcttgttcaaacag |
44575742 |
T |
|
| Q |
101 |
acaggttcaagtttcttgataaggcggctataatagctgaaccaagtgaattgaacaaccaaggaattgctaagaatggttggagactttgtagtttgca |
200 |
Q |
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| T |
44575741 |
acaggttcaagtttcttgataaggcggctataatagctgaaccaagtgaattgaacaaccaaggaattgctaagaatggttggagactttgtagtttgca |
44575642 |
T |
|
| Q |
201 |
acaagtggaacacttgaaatgcttgtttggaattctaccagtatgggtgacaggaatctgttgtttcattgtaatggatcagcagagcacatttggtgtg |
300 |
Q |
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| T |
44575641 |
acaagtggaacacttgaaatgcttgtttggaattctaccagtatgggtgacaggaatttgttgtttcattgtaatggatcagcagagcacatttggtgtg |
44575542 |
T |
|
| Q |
301 |
cttcaagttatacaaactgataggtctattggatctcacttcaaggttccaccaggatggatgaacttgatatcaatgacatcactttcattttggatat |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575541 |
cttcaagttatacagactgataggtctattggatctcacttcaaggttccaccaggatggatgaacttgatatcaatgacatcactttcattttggatat |
44575442 |
T |
|
| Q |
401 |
gcatttatgagtgtatctaccttcctataatgaggataatcaataaaagggctacaagaagaatgagcatgggatgcagaatcagaattgggatattatt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575441 |
gcatttatgagtgtatctaccttcctataatgaggataatcaataaaagggctacaagaagaatgagcatgggatgcagaatcagaattgggatattatt |
44575342 |
T |
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| Q |
501 |
atct |
504 |
Q |
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|||| |
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| T |
44575341 |
atct |
44575338 |
T |
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