View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18024_high_7 (Length: 367)
Name: NF18024_high_7
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 40007943 - 40007593
Alignment:
| Q |
17 |
atctatggacttggaaaaaagagggcattgcattagcagcagagaaaacagataaaacacatgatctacacaagtccaatgtgcttgagagaccaaaagt |
116 |
Q |
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| T |
40007943 |
atctatggacttggaaaaaagagggcattgcattagcagcagagaaaacagataaaacacatgatctacacaagtccaatgtgcttgagagaccaaaagt |
40007844 |
T |
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| Q |
117 |
tatttacaatgaaaaaacaagaaagtatgtgatgtggatgcatatcgacaacgccaattacgccaaagcttccgttggcatagcattcagtgatactcct |
216 |
Q |
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| T |
40007843 |
tatttacaatgaaaaaacaagaaagtatgtgatgtggatgcatatcgacaacgccaattacgccaaagctaccgttggcatagcattcagtgatactcct |
40007744 |
T |
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| Q |
217 |
accggtccattcaaatacctcgggagccaaagacctcatggatatcaaagcagggacatgacacttttcaaagatgaagacaatgttgcatatctaatat |
316 |
Q |
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| T |
40007743 |
accggtccattcaaatacctcgggagccaaagacctcatcgatatcaaagcagggacatgacacttttcaaagatgaagacaatgttgcatatctaatat |
40007644 |
T |
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| Q |
317 |
actcatctgaagaaaacaatgtaatgcacattggacccttgactgaagatt |
367 |
Q |
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| T |
40007643 |
actcatctgaagaaaacaatgtaatgcacattggacccttgactgaagatt |
40007593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 290
Target Start/End: Original strand, 5353146 - 5353414
Alignment:
| Q |
22 |
tggacttggaaaaaagagggcattgcattagcagcagagaaaacagataaaacacatgatctacacaagtccaatgtgcttgagagaccaaaagttattt |
121 |
Q |
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| T |
5353146 |
tggacctggaaacatgaggggatcgtattggcagcagaggaaacagatgaaacccatgatctgcacaaatctaacgtgctcgagaggccaaaagtgattt |
5353245 |
T |
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| Q |
122 |
acaatgaaaaaacaagaaagtatgtgatgtggatgcatatcgacaacgccaattacgccaaagcttccgttggcatagcattcagtgatactcctaccgg |
221 |
Q |
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||||||| || || |||||||||||||||||||||||| || | || || ||| ||||||| || |||||| ||||| ||||||| | ||| || |
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| T |
5353246 |
acaatgagaagactgaaaagtatgtgatgtggatgcatattgatgatgctaactacaccaaagcgtctgttggcgtagcaatcagtgacgcacctgatgg |
5353345 |
T |
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| Q |
222 |
tccattcaaatacctcgggagccaaagacctcatggatatcaaagcagggacatgacacttttcaaaga |
290 |
Q |
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| T |
5353346 |
tcctttcaattatctcggtagccacaggccgcacggattcgaaagcagggatatgacagttttcaaaga |
5353414 |
T |
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