View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18024_high_9 (Length: 344)

Name: NF18024_high_9
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18024_high_9
NF18024_high_9
[»] chr5 (3 HSPs)
chr5 (114-328)||(3620544-3620758)
chr5 (11-104)||(3620810-3620903)
chr5 (11-72)||(3620927-3620988)
[»] chr4 (2 HSPs)
chr4 (188-318)||(41960144-41960274)
chr4 (27-79)||(16977270-16977322)
[»] chr6 (1 HSPs)
chr6 (14-79)||(5656567-5656632)
[»] chr7 (2 HSPs)
chr7 (15-77)||(41008912-41008974)
chr7 (12-65)||(21248983-21249036)
[»] chr1 (1 HSPs)
chr1 (13-65)||(15395417-15395469)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 114 - 328
Target Start/End: Complemental strand, 3620758 - 3620544
Alignment:
Q  114 catatagattgttgaggtgtaataataataaggatcctcttttctcaccaagtaaattcattgctgcaccgagcgttccaccagttgcaatcagatcatc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3620758 catatagattgttgaggtgtaataataataaggatcctcttttctcaccaagtaaattcattgctgcaccgagcgttccaccagttgcaatcaaatcatc 3620659  T
Q  214 aaccacaatagcacgttcaccagcttcaacagctccaacatgcatctcaagacaatcccttccatattccagaatatattcttgagatataactttacct 313  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3620658 aaccacaatagcacgttcaccagtttcaacagctccaacatgcatctcaagacaatcccttccatattccagaatatattcttgagatataactttgcct 3620559  T
Q  314 gacacactagatttt 328  Q
    |||||||||||||||    
T  3620558 gacacactagatttt 3620544  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 3620903 - 3620810
Alignment:
Q  11 cagagacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaacagagtcggagactttgcttacaaagacgaccaatttgg 104  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3620903 cagagacctcattgaaaaactattaacaaagacagaaactagtttaaaatattaacagagtcagagactttgcttacaaagacgaccaatttgg 3620810  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 3620927 - 3620988
Alignment:
Q  11 cagagacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaacagagtc 72  Q
    ||||||||||||||||||||| || | ||| || || ||||||||  |||||||||||||||    
T  3620927 cagagacctaattgaaaaacttttgataaaaactgagactagtttgtaatattaacagagtc 3620988  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 188 - 318
Target Start/End: Original strand, 41960144 - 41960274
Alignment:
Q  188 gttccaccagttgcaatcagatcatcaaccacaatagcacgttcaccagcttcaacagctccaacatgcatctcaagacaatcccttccatattccagaa 287  Q
    ||||||||||| ||||||| ||||||||| || |  ||||||||||||  ||||||  ||||||||||||||||||||||||||||||| |||||||  |    
T  41960144 gttccaccagtagcaatcaaatcatcaactactaaggcacgttcaccatgttcaactcctccaacatgcatctcaagacaatcccttccgtattccaata 41960243  T
Q  288 tatattcttgagatataactttacctgacac 318  Q
    | || |||||||| || ||||| ||||||||    
T  41960244 tgtactcttgagaaattactttgcctgacac 41960274  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 16977270 - 16977322
Alignment:
Q  27 aaactattaacaaagacggaaactagtttaaaatattaacagagtcggagact 79  Q
    |||||||| ||||||||||| | |||||| ||||||||| ||||||| |||||    
T  16977270 aaactattgacaaagacggagagtagttttaaatattaatagagtcgaagact 16977322  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 5656567 - 5656632
Alignment:
Q  14 agacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaacagagtcggagact 79  Q
    |||||||||||| ||||| ||||||||||| || |||||||||||||||||| | |||||| ||||    
T  5656567 agacctaattgagaaacttttaacaaagacagagactagtttaaaatattaatatagtcggggact 5656632  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 41008912 - 41008974
Alignment:
Q  15 gacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaacagagtcggaga 77  Q
    ||||||||||| ||||| ||||||||||  || |||| ||||||||||||| |||||| ||||    
T  41008912 gacctaattgagaaacttttaacaaagatagagactattttaaaatattaatagagtcagaga 41008974  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 21248983 - 21249036
Alignment:
Q  12 agagacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaa 65  Q
    ||||||| |||||||||||| || ||||||| ||| |||| |||||||||||||    
T  21248983 agagaccaaattgaaaaacttttgacaaagatggagactaatttaaaatattaa 21249036  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 15395417 - 15395469
Alignment:
Q  13 gagacctaattgaaaaactattaacaaagacggaaactagtttaaaatattaa 65  Q
    ||||||||||||||||||| || ||||| || | ||||| |||||||||||||    
T  15395417 gagacctaattgaaaaacttttgacaaaaacagtaactattttaaaatattaa 15395469  T

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