View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18024_low_12 (Length: 292)
Name: NF18024_low_12
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 8404349 - 8404634
Alignment:
| Q |
1 |
ttgtgaaggttggattttgttcatcacaagtaatattccagtggctgcagaaaataacatagcaga--agatagtttcaaagccagaaggggtgcatcag |
98 |
Q |
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| T |
8404349 |
ttgtgaaggttggattttgttcatcacaagtaatattccagtggcggcagaaaataacatagcagagaagatagtttcaaagccagaaggggtgcatcag |
8404448 |
T |
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| Q |
99 |
aatcaaaacaacatgcaatagcagatattgttgaagctgtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcgcgttgctgtcc |
198 |
Q |
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| T |
8404449 |
aatcaaaacaacatgcaatagcagacattgttgaagctgtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcc |
8404548 |
T |
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| Q |
199 |
taagtttttatgcatttcaattctgtctgatacagcctccgaaatcgc--agagttttatagtagtaatattaaattttgaagaat |
282 |
Q |
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| T |
8404549 |
taagtttttatgcatttcaattctgtctgatacagcctccgaaattgcatagagttttatagtagtaatattaaaatttgaagaat |
8404634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 8368812 - 8368908
Alignment:
| Q |
137 |
gtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcgcgttgctgtcctaagtttttatgcatttcaattctgtctgatacag |
233 |
Q |
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| T |
8368812 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacag |
8368908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 8400598 - 8400502
Alignment:
| Q |
137 |
gtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcgcgttgctgtcctaagtttttatgcatttcaattctgtctgatacag |
233 |
Q |
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| T |
8400598 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacag |
8400502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 8422175 - 8422079
Alignment:
| Q |
137 |
gtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcgcgttgctgtcctaagtttttatgcatttcaattctgtctgatacag |
233 |
Q |
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| T |
8422175 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacag |
8422079 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 8375592 - 8375514
Alignment:
| Q |
5 |
gaaggttggattttgttcatcacaagtaatattccagtggctgcagaaaataacatagcagaagatagtttcaaagcca |
83 |
Q |
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| T |
8375592 |
gaaggttggattttgttcatgataagcaacaatccagtggctgcagagaataaaagagcagaagataacttcaaagcca |
8375514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 8439511 - 8439589
Alignment:
| Q |
5 |
gaaggttggattttgttcatcacaagtaatattccagtggctgcagaaaataacatagcagaagatagtttcaaagcca |
83 |
Q |
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| T |
8439511 |
gaaggttggattttgttcatgataagcaacaatccagtggctgcagagaataaaagagcagaagataacttcaaagcca |
8439589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 8406297 - 8406383
Alignment:
| Q |
8 |
ggttggattttgttcatcacaagtaatattccagtggctgcagaaaataacatagcagaagatagtttcaaagccagaaggggtgca |
94 |
Q |
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| T |
8406297 |
ggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtggtgca |
8406383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 8417629 - 8417707
Alignment:
| Q |
5 |
gaaggttggattttgttcatcacaagtaatattccagtggctgcagaaaataacatagcagaagatagtttcaaagcca |
83 |
Q |
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| T |
8417629 |
gaaggttggattttgttcatgataagcaacaatccggtggctgcagaaaacaaaagagcagaagataacttcaaagcca |
8417707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 8395275 - 8395189
Alignment:
| Q |
8 |
ggttggattttgttcatcacaagtaatattccagtggctgcagaaaataacatagcagaagatagtttcaaagccagaaggggtgca |
94 |
Q |
| |
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| T |
8395275 |
ggttggattttgttcatgataatcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtggtgca |
8395189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 8412417 - 8412503
Alignment:
| Q |
8 |
ggttggattttgttcatcacaagtaatattccagtggctgcagaaaataacatagcagaagatagtttcaaagccagaaggggtgca |
94 |
Q |
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| T |
8412417 |
ggttggattttgttcatgataaacaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtggtgca |
8412503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 8434515 - 8434601
Alignment:
| Q |
8 |
ggttggattttgttcatcacaagtaatattccagtggctgcagaaaataacatagcagaagatagtttcaaagccagaaggggtgca |
94 |
Q |
| |
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| T |
8434515 |
ggttggattttgttcatgataaacaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtggtgca |
8434601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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