View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18024_low_13 (Length: 284)
Name: NF18024_low_13
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 40007525 - 40007253
Alignment:
| Q |
1 |
caaacacaagggaacatattacatggttacatcaggttgcactggatgggcaccaaatgaagcacttgttcattcagctgagacaatcttagggacatgg |
100 |
Q |
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| T |
40007525 |
caaacacaagggaacatattacatggttacatcaggttgcactggatgggcaccaaatgaagcacttgttcattcagctgagacaatcttagggacatgg |
40007426 |
T |
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| Q |
101 |
gaaacaattggaaatccatgtgttgctggaaacaaaatgtttagagtttcgacttttcttgcacaaagtacttttgtgcttccattaactaggtttcctg |
200 |
Q |
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| T |
40007425 |
gaaacaattggaaatccatgtgttgctggaaacaaaatgtttagagtttcgacttttcttgcacaaagtacttttgtgcttccattaactaggtttcctg |
40007326 |
T |
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| Q |
201 |
gtttgtttatcttcatggcggatagatggaatccaagtgagttaagagattctagatatgtttggttgccttt |
273 |
Q |
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| T |
40007325 |
gtttgtttatcttcatggcggatagatggaatccaagtgagttaagagattctagatatgtttggttgccttt |
40007253 |
T |
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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 5353567 - 5353832
Alignment:
| Q |
9 |
agggaacatattacatggttacatcaggttgcactggatgggcaccaaatgaagcacttgttcattcagctgagacaatcttagggacatgggaaacaat |
108 |
Q |
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| T |
5353567 |
agggtacatactacatgattacatcgggttgcacggggtgggccccaaatgaggcactggcgcatgcagcagagtcaatcatggggccgtgggaaacaat |
5353666 |
T |
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| Q |
109 |
tggaaatccatgtgttgctggaaacaaaatgtttagagtttcgacttttcttgcacaaagtacttttgtgcttccattaactaggtttcctggtttgttt |
208 |
Q |
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| T |
5353667 |
gggaaatccatgcttgggaggaaacaaaatgtttagactcacaactttctttgctcagagcactttcgtgcttccgatttctggtttccctggagcgttc |
5353766 |
T |
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| Q |
209 |
atcttcatggcggatagatggaatccaagtgagttaagagattctagatatgtttggttgcctttg |
274 |
Q |
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||||||||||| ||| ||||||||||| ||| |||||||| || |||||||| ||||| |||||| |
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| T |
5353767 |
atcttcatggcagatcgatggaatccagctgacttaagagactcgagatatgtatggttacctttg |
5353832 |
T |
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