View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18024_low_16 (Length: 275)
Name: NF18024_low_16
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 31641876 - 31641691
Alignment:
| Q |
8 |
catcatcaccacaaacacaaacccattagtccaatctcttttcctcttcccaaatcaacaacaaagtttccaaaacccacaaagccacatcacctgggac |
107 |
Q |
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| T |
31641876 |
catcaccaccacaaacacaaacccattagtccaatctcttttcctcttcccaaatcaacaacaaagtttccaaaacccacaaagccacatcacctgggac |
31641777 |
T |
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| Q |
108 |
ccacctcaacaaaaccctaaccctagcaaccttaataatactctccaccacaacatcaagcctgaatctccaaattttcacaccaa |
193 |
Q |
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| T |
31641776 |
ccacctcaacaaaaccctaaccctagcaaccttaataatactctccaccacaacatcaagcctgaatctccaaattttcacaccaa |
31641691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 31641667 - 31641624
Alignment:
| Q |
220 |
catttcttcatcacacaaaccctaagagcataatgacatcatca |
263 |
Q |
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| T |
31641667 |
catttcttcatcacacaaaccctaagagcataatgacatcatca |
31641624 |
T |
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