View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18024_low_17 (Length: 266)
Name: NF18024_low_17
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 22702028 - 22702266
Alignment:
| Q |
19 |
gagagtatcgaggtacattgtaaacatgatgttcagtaactaataatggattaccaaaaagagacattgttaccatgaatgggagaccatgaaaagtaag |
118 |
Q |
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| T |
22702028 |
gagagtatcgaggtacattgtaaacatgatgttcagtaactaataatggattaccaaa--gagacattgttaccatgaatgggagaccatgaaaagtaag |
22702125 |
T |
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| Q |
119 |
aaaagacacagcaagacaacaacatccaagagaggaaattacaaaccattgtcatcttaataaattttcctttgcaaagttatcataccaaattctaaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22702126 |
aaaagacacagcaagacaacaacatccaagagaggaaattacaaaccattgtcatcttaataaattttcctttgcatagttatcataccaaattctaaca |
22702225 |
T |
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| Q |
219 |
gcaaaatgaatcagctacccttttatatgtaattggtacattgat |
263 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22702226 |
gcaaaatgaatcagctaccctttta----taattggtacattgat |
22702266 |
T |
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