View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18024_low_19 (Length: 239)
Name: NF18024_low_19
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39218108 - 39217888
Alignment:
| Q |
1 |
atttaaatttatgcttcaggtacataatcaagcgcttcggcaatgacacattagttgtcgaaacaaactcaaagcaaaaaagacggagtaagattgcaan |
100 |
Q |
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| T |
39218108 |
atttaaatttatgcttcgggtacataatcaagcgcttcggcaatgacacattagttgtcgaaacaaactcaaagcaaaaaagacggactaagattgcaat |
39218009 |
T |
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| Q |
101 |
nnnnnngttgttgatgagaaccttttttgaattcattttcttacatccaagaaattttgcatcatgaatgattttttactatgcttaacttgtacgtttt |
200 |
Q |
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| T |
39218008 |
ttttttgttgttgatgagaaccttttttgaattcattttcttacatccaccaaattttgcatcatgaatgattttttactatgcttaacttgtacgtttt |
39217909 |
T |
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| Q |
201 |
tactacggttatagcttgtat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
39217908 |
tactacggttatagcttgtat |
39217888 |
T |
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