View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18024_low_20 (Length: 238)
Name: NF18024_low_20
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 31882564 - 31882361
Alignment:
| Q |
17 |
aaaatcaacagatattgcttgtttatcgcttttcaatcttgcaaattgtctcaaaaccgatagaagcgaaccctttccaaaagacttattaatgcttgca |
116 |
Q |
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| T |
31882564 |
aaaaccaacagatattgcttgtttatcgcttttcaatcttgcaaattgtctcaaaatcgatagaagcgaaccctttccaaaagacttattaatgcttgca |
31882465 |
T |
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| Q |
117 |
tggaatgctagagttggatattcttttgacaaaaccctaagccatcctttagttgcccaagcaggaattagatcacacttgttcaacaaaagcaccatgt |
216 |
Q |
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| T |
31882464 |
tggaatgctagagttggatattcctttgacaaaaccctaagccatccttttgttgcccaagcaggaattagatcacacttgttcaacaaaagcaccatgt |
31882365 |
T |
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| Q |
217 |
gttt |
220 |
Q |
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|||| |
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| T |
31882364 |
gttt |
31882361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 43154457 - 43154366
Alignment:
| Q |
88 |
cctttccaaaagacttattaatgcttgcatggaatgctagagttggatattcttttgacaaaaccctaagccatcctttagttgcccaagca |
179 |
Q |
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| T |
43154457 |
cctttacaaaggacttatttatgcttgcatggaatgctagtgttgaatattcttttgacaaaagtctaatatatccttttgttgcccaagca |
43154366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 33479805 - 33479912
Alignment:
| Q |
88 |
cctttccaaaagacttattaatgcttgcatggaatgctagagttggatattcttttgacaaaaccctaagccatcctttagttgcccaagcaggaattag |
187 |
Q |
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| T |
33479805 |
cctttccaaaggacttattaatacttgcatggaatgctagcgttggatattcttttgacaaaactctaagccatccttttgttgcccaagcaggaattag |
33479904 |
T |
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| Q |
188 |
atcacact |
195 |
Q |
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||| |||| |
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| T |
33479905 |
atcgcact |
33479912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 33479565 - 33479633
Alignment:
| Q |
22 |
caacagatattgcttgtttatcgcttttcaatcttgcaaattgtctcaaaaccgatagaagcgaaccct |
90 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
33479565 |
caacagatattgcttgcttatcacttttcaatcttgcaaattgtctcagaaccgatagaagtgaaccct |
33479633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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