View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18024_low_23 (Length: 216)
Name: NF18024_low_23
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 33557285 - 33557443
Alignment:
| Q |
44 |
ctaaggtttagtttttgtatattttaaaaatagttgcaagcaacaataattttataaccgtctctcaaa-gagttggattcacatggggatac----agg |
138 |
Q |
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| T |
33557285 |
ctaagatttagtttttgtatattttaaaaatagttgcaagcaacaataattttataaccgtctctcaaaagagttggattcacatggggatacatacagg |
33557384 |
T |
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| Q |
139 |
taagtccatactacgagtatgtttgttaggagagatggtccagacctatggtggccctc |
197 |
Q |
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| T |
33557385 |
taagtccatactacgagtatgtttgttaggagagatggtccagacctatggtggccctc |
33557443 |
T |
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