View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18024_low_3 (Length: 515)

Name: NF18024_low_3
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18024_low_3
NF18024_low_3
[»] chr3 (22 HSPs)
chr3 (171-379)||(37635401-37635609)
chr3 (171-379)||(37643690-37643898)
chr3 (171-379)||(37638315-37638523)
chr3 (171-379)||(37646603-37646811)
chr3 (171-379)||(37649516-37649724)
chr3 (171-379)||(37652433-37652644)
chr3 (404-501)||(37635280-37635377)
chr3 (404-501)||(37638194-37638291)
chr3 (404-501)||(37646482-37646579)
chr3 (404-501)||(37649395-37649492)
chr3 (405-501)||(37643569-37643665)
chr3 (422-501)||(37652307-37652386)
chr3 (17-85)||(37635696-37635764)
chr3 (17-85)||(37638610-37638678)
chr3 (20-85)||(37643984-37644049)
chr3 (17-85)||(37646897-37646965)
chr3 (17-85)||(37649810-37649878)
chr3 (27-59)||(37635691-37635723)
chr3 (27-59)||(37638605-37638637)
chr3 (27-59)||(37643979-37644011)
chr3 (27-59)||(37646892-37646924)
chr3 (27-59)||(37649805-37649837)
[»] chr2 (1 HSPs)
chr2 (448-501)||(5884252-5884305)
[»] chr4 (1 HSPs)
chr4 (461-501)||(32388617-32388657)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 171 - 379
Target Start/End: Complemental strand, 37635609 - 37635401
Alignment:
Q  171 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 270  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635609 tgagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 37635510  T
Q  271 gttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 370  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635509 gttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 37635410  T
Q  371 tcttttatc 379  Q
    |||||||||    
T  37635409 tcttttatc 37635401  T

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Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 171 - 379
Target Start/End: Complemental strand, 37643898 - 37643690
Alignment:
Q  171 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 270  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37643898 tgagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 37643799  T
Q  271 gttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 370  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37643798 gttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 37643699  T
Q  371 tcttttatc 379  Q
    |||||||||    
T  37643698 tcttttatc 37643690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 171 - 379
Target Start/End: Complemental strand, 37638523 - 37638315
Alignment:
Q  171 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 270  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37638523 tgagaagtagagtgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 37638424  T
Q  271 gttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 370  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37638423 gttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 37638324  T
Q  371 tcttttatc 379  Q
    |||||||||    
T  37638323 tcttttatc 37638315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 171 - 379
Target Start/End: Complemental strand, 37646811 - 37646603
Alignment:
Q  171 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 270  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37646811 tgagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaat 37646712  T
Q  271 gttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 370  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37646711 gttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 37646612  T
Q  371 tcttttatc 379  Q
    |||||||||    
T  37646611 tcttttatc 37646603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 171 - 379
Target Start/End: Complemental strand, 37649724 - 37649516
Alignment:
Q  171 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 270  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37649724 tgagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaagggtggaaaaatgttgaagcaattgtataagaag 37649625  T
Q  271 gttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 370  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37649624 gttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 37649525  T
Q  371 tcttttatc 379  Q
    |||||||||    
T  37649524 tcttttatc 37649516  T

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Target: chr3; HSP #6
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 171 - 379
Target Start/End: Complemental strand, 37652644 - 37652433
Alignment:
Q  171 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 270  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||  |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  37652644 tgagaagtagagcgttcaacaaggaattcaagatcacaaaatttcgggaaaccaaagatttttgaatgatggaaaaatgttgaagcaatggtataagaag 37652545  T
Q  271 gttacaaatgcgttccatagaaaagcaactatcttcttccagt---aaggaggagataggaaataagagtttcatctcattctctcttttctactattct 367  Q
    |||||||||| |||| ||| ||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||  ||| |    
T  37652544 gttacaaatgtgttcaataaaaaagcaactatcttcttccaataagaaggaggagataggaaataagagtttcatctcattctctcttttctagcatttt 37652445  T
Q  368 atttcttttatc 379  Q
    ||||||||||||    
T  37652444 atttcttttatc 37652433  T

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Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 404 - 501
Target Start/End: Complemental strand, 37635377 - 37635280
Alignment:
Q  404 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 501  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635377 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37635280  T

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Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 404 - 501
Target Start/End: Complemental strand, 37638291 - 37638194
Alignment:
Q  404 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 501  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37638291 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37638194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 404 - 501
Target Start/End: Complemental strand, 37646579 - 37646482
Alignment:
Q  404 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 501  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37646579 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37646482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 404 - 501
Target Start/End: Complemental strand, 37649492 - 37649395
Alignment:
Q  404 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 501  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37649492 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37649395  T

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Target: chr3; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 405 - 501
Target Start/End: Complemental strand, 37643665 - 37643569
Alignment:
Q  405 ggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 501  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37643665 ggtcgtggagcggtgttagcttttatgctatgccttttaggtgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37643569  T

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Target: chr3; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 422 - 501
Target Start/End: Complemental strand, 37652386 - 37652307
Alignment:
Q  422 agcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 501  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37652386 agctttgatgctatgcctcttaggcgtcaccgtttatggtgaagatccttacatttactatacatggaaggttacctatg 37652307  T

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Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 37635764 - 37635696
Alignment:
Q  17 atgatcatacatgtatatttgaatcgacattactttagataatgtatatttgaatcaacattactttag 85  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37635764 atgatcaaacatgtatatttgaattgacattactttagataatgtatatttgaatcgacattactttag 37635696  T

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Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 37638678 - 37638610
Alignment:
Q  17 atgatcatacatgtatatttgaatcgacattactttagataatgtatatttgaatcaacattactttag 85  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37638678 atgatcaaacatgtatatttgaattgacattactttagataatgtatatttgaatcgacattactttag 37638610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 37644049 - 37643984
Alignment:
Q  20 atcatacatgtatatttgaatcgacattactttagataatgtatatttgaatcaacattactttag 85  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37644049 atcaaacatgtatatttgaattgacattactttagataatgtatatttgaatcgacattactttag 37643984  T

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Target: chr3; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 37646965 - 37646897
Alignment:
Q  17 atgatcatacatgtatatttgaatcgacattactttagataatgtatatttgaatcaacattactttag 85  Q
    ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37646965 atgatcaaacatgtatatttaaattgacattactttagataatgtatatttgaatcgacattactttag 37646897  T

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Target: chr3; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 37649878 - 37649810
Alignment:
Q  17 atgatcatacatgtatatttgaatcgacattactttagataatgtatatttgaatcaacattactttag 85  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37649878 atgatcaaacaggtatatttgaattgacattactttagataatgtatatttgaatcgacattactttag 37649810  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 37635723 - 37635691
Alignment:
Q  27 atgtatatttgaatcgacattactttagataat 59  Q
    |||||||||||||||||||||||||||||||||    
T  37635723 atgtatatttgaatcgacattactttagataat 37635691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 37638637 - 37638605
Alignment:
Q  27 atgtatatttgaatcgacattactttagataat 59  Q
    |||||||||||||||||||||||||||||||||    
T  37638637 atgtatatttgaatcgacattactttagataat 37638605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 37644011 - 37643979
Alignment:
Q  27 atgtatatttgaatcgacattactttagataat 59  Q
    |||||||||||||||||||||||||||||||||    
T  37644011 atgtatatttgaatcgacattactttagataat 37643979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 37646924 - 37646892
Alignment:
Q  27 atgtatatttgaatcgacattactttagataat 59  Q
    |||||||||||||||||||||||||||||||||    
T  37646924 atgtatatttgaatcgacattactttagataat 37646892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 37649837 - 37649805
Alignment:
Q  27 atgtatatttgaatcgacattactttagataat 59  Q
    |||||||||||||||||||||||||||||||||    
T  37649837 atgtatatttgaatcgacattactttagataat 37649805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 501
Target Start/End: Complemental strand, 5884305 - 5884252
Alignment:
Q  448 tcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 501  Q
    |||| ||||| |||||||| |||||||||||||  |||||||| ||||||||||    
T  5884305 tcactgtttatggtgaagacccttacatttacttcacatggaatgttacctatg 5884252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 501
Target Start/End: Complemental strand, 32388657 - 32388617
Alignment:
Q  461 tgaagatccttacatttactatacatggaaggttacctatg 501  Q
    ||||||||||||  | |||||||||||||||||||||||||    
T  32388657 tgaagatccttatgtgtactatacatggaaggttacctatg 32388617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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