View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18024_low_5 (Length: 433)
Name: NF18024_low_5
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18024_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 40970119 - 40969717
Alignment:
| Q |
17 |
caaagaagacgctcaaatgaggttagtgtcgtaatgttaacatgtatctttctatgttaccaaatacattcaaatcatatgtacg-agaggtgattcata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40970119 |
caaagaagacgctcaaatgaggttagtgtcgtaatgttaacatgtatctttctatgttaccaaatacattcaaatcatatgtacggagaggtgattcata |
40970020 |
T |
|
| Q |
116 |
tattgaatatcgtaagttaagatgattaatttcggtattttgacggttctaacnnnnnnnnnctgtatcagtttcctcctgaaataagcaaatcaaatgg |
215 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40970019 |
tattgaatatcgtaagttgagatgattaatttcggtattttgacggttcta-ccttttttttctgtatcagtttcctcctgaaataagcaaatcaaatgg |
40969921 |
T |
|
| Q |
216 |
agccattttacttgtaaatgataaatataaatacagatcaatgtggatacgtgcatattcatctctatggatgctagcatttgtctcacttatcatatat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40969920 |
agccattttacttgtaaatgataaatataaatacagatcaatgtggatacgtgcatattcatctctatggatgctagcatttgtctcacttatcatatat |
40969821 |
T |
|
| Q |
316 |
atgggtcatctttacatctgggctatggtggttgttatccaaatatttatggctagtgagctcttcaatctattgagaatagctagtcaagataaacgtc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40969820 |
atgggtcatctttacatctgggctatggtggttgttatccaaatatttatggctagtgagctcttcaatctattgagaatagctagtcaagataaacgtc |
40969721 |
T |
|
| Q |
416 |
tccc |
419 |
Q |
| |
|
|||| |
|
|
| T |
40969720 |
tccc |
40969717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University