View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18024_low_8 (Length: 365)

Name: NF18024_low_8
Description: NF18024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18024_low_8
NF18024_low_8
[»] chr4 (5 HSPs)
chr4 (12-349)||(35250037-35250374)
chr4 (116-232)||(51220010-51220126)
chr4 (116-232)||(51220797-51220913)
chr4 (121-228)||(51220430-51220537)
chr4 (86-118)||(51220812-51220844)
[»] chr1 (17 HSPs)
chr1 (169-328)||(27777591-27777740)
chr1 (169-328)||(27782221-27782370)
chr1 (169-320)||(27781234-27781385)
chr1 (136-277)||(38226923-38227063)
chr1 (121-208)||(27777474-27777561)
chr1 (121-208)||(27780991-27781078)
chr1 (125-208)||(27782400-27782483)
chr1 (126-204)||(38227211-38227289)
chr1 (140-232)||(17663550-17663642)
chr1 (136-208)||(38227135-38227207)
chr1 (136-208)||(38227063-38227135)
chr1 (145-232)||(17700337-17700424)
chr1 (126-232)||(21899130-21899236)
chr1 (83-120)||(38226980-38227017)
chr1 (83-118)||(17663592-17663627)
chr1 (83-118)||(17700352-17700387)
chr1 (171-208)||(27781080-27781117)
[»] chr7 (3 HSPs)
chr7 (121-232)||(440904-441015)
chr7 (265-345)||(440690-440774)
chr7 (83-118)||(440919-440954)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 35250374 - 35250037
Alignment:
Q  12 atgaaggatcaactgccaatatcgatgtgaatcacagcggtgctaaaaggcaaaaaattccaaacaatatggatttgaacgagcttccaagtgatgattt 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35250374 atgaaggatcaactgccaatatcgatgtgaatcacagcggcgctaaaaggcaaaaaattccaaacaatatggatttgaacgagcttccaagtgatgattt 35250275  T
Q  112 tgaagataatgaagagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgatttt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35250274 tgaagataatgaagagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaattttgatttgaacgagcttgcaagtgatgatttt 35250175  T
Q  212 gaagatgaatccaattagtgtatcgtcttggtttatatctttttaatgattttgaatgatattatggtttttgtgtgggatgaatacccttgatgttatc 311  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35250174 gaagatgaatccaattagtgtctcgtcttggtttatatctttttaatgattttgaatgatattatggtttttgtgtgggatgaatacccttgatgttatc 35250075  T
Q  312 atgtaattttccttaattggaagttgtttagttaaaat 349  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35250074 atgtaattttccttaattggaagttgtttagttaaaat 35250037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 51220126 - 51220010
Alignment:
Q  116 gataatgaagagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgattttgaag 215  Q
    |||| |||||||||||||||||| |||  |||||||||| | ||||||| |||||| | ||||||| ||| ||| |||||| ||||||||||||||||||    
T  51220126 gatattgaagagaagaagattaacgaaagtgaaactgaattagggtcaatagttgttatgaattttgattcgaatgagcttccaagtgatgattttgaag 51220027  T
Q  216 atgaatccaattagtgt 232  Q
    ||||| |||||||||||    
T  51220026 atgaaaccaattagtgt 51220010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 51220913 - 51220797
Alignment:
Q  116 gataatgaagagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgattttgaag 215  Q
    |||| |||||||||||||||||| |||  |||||||||| | ||||||| | |||| | ||||||| | |||||||||||| ||||||||| ||||||||    
T  51220913 gatattgaagagaagaagattaacgaaagtgaaactgaattagggtcaataattgttatgaattttgaattgaacgagcttccaagtgatggttttgaag 51220814  T
Q  216 atgaatccaattagtgt 232  Q
    ||||| |||| ||||||    
T  51220813 atgaaaccaactagtgt 51220797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 51220430 - 51220537
Alignment:
Q  121 tgaagagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgattttgaagatgaa 220  Q
    ||||||||||||||||||||||| ||||||| || |||| |||| |  ||| | ||||| | |||| || || ||| ||||||||| ||||||| |||||    
T  51220430 tgaagagaagaagattaatgaaggtgaaacttaattcggatcaatacatgttatgaattatgattttaatgatcttccaagtgatgcttttgaatatgaa 51220529  T
Q  221 tccaatta 228  Q
     |||||||    
T  51220530 accaatta 51220537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 51220844 - 51220812
Alignment:
Q  86 ttgaacgagcttccaagtgatgattttgaagat 118  Q
    |||||||||||||||||||||| ||||||||||    
T  51220844 ttgaacgagcttccaagtgatggttttgaagat 51220812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 169 - 328
Target Start/End: Original strand, 27777591 - 27777740
Alignment:
Q  169 tgtgaagaatttttatttgaacgagcttgcaagtgatgattttgaagatgaatccaattagtgtatcgtcttggtttatatctttttaatgattttgaat 268  Q
    ||||||||||||  ||||||||||| || |||||||||||| |||||||||| ||||||||||| |||||||||||||          ||||||||||||    
T  27777591 tgtgaagaatttagatttgaacgagtttacaagtgatgattgtgaagatgaaaccaattagtgtctcgtcttggttta----------atgattttgaat 27777680  T
Q  269 gatattatggtttttgtgtgggatgaatacccttgatgttatcatgtaattttccttaat 328  Q
    |||||||||  |||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  27777681 gatattatgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaat 27777740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 169 - 328
Target Start/End: Complemental strand, 27782370 - 27782221
Alignment:
Q  169 tgtgaagaatttttatttgaacgagcttgcaagtgatgattttgaagatgaatccaattagtgtatcgtcttggtttatatctttttaatgattttgaat 268  Q
    ||||||||||||  ||||||||||| || |||||||||||| |||||||||| ||||||||||| |||||||||||||          ||||||||||||    
T  27782370 tgtgaagaatttagatttgaacgagttttcaagtgatgattgtgaagatgaaaccaattagtgtctcgtcttggttta----------atgattttgaat 27782281  T
Q  269 gatattatggtttttgtgtgggatgaatacccttgatgttatcatgtaattttccttaat 328  Q
    |||||||||  |||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  27782280 gatattatgaattttgtatgggatgaatacccttgatgttgtcatgtaattttctttaat 27782221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 169 - 320
Target Start/End: Original strand, 27781234 - 27781385
Alignment:
Q  169 tgtgaagaatttttatttgaacgagcttgcaagtgatgattttgaagatgaatccaattagtgtatcgtcttggtttatatctttttaatgattttgaat 268  Q
    ||||||||||||| ||| ||||| |||| ||||  || ||||||||||||||   | |||| || ||||||| |||||||||||||||||||||||||||    
T  27781234 tgtgaagaattttgattcgaacgtgcttccaagaaataattttgaagatgaagatatttagcgtctcgtcttagtttatatctttttaatgattttgaat 27781333  T
Q  269 gatattatggtttttgtgtgggatgaatacccttgatgttatcatgtaattt 320  Q
    |||||||||  |||| | ||||||| |||||||||||||| |||||||||||    
T  27781334 gatattatgaattttttatgggatggatacccttgatgttgtcatgtaattt 27781385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 38227063 - 38226923
Alignment:
Q  136 taatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgattttgaagatgaatccaattagtgtatc 235  Q
    |||||||| ||||||||||   |||||||||||||||||||||||  |||||||||||||| |||||||||| ||||||||| || ||||||||||| ||    
T  38227063 taatgaaggtgaaactgaatcagggtcaaaagttgtgaagaatttagatttgaacgagcttccaagtgatgagtttgaagataaaaccaattagtgtctc 38226964  T
Q  236 gtcttggtttatatctttttaatgattttgaatgatattatg 277  Q
    ||| | |||||||| |||||  ||||||| ||||||||||||    
T  38226963 gtcatagtttatat-ttttttgtgatttttaatgatattatg 38226923  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 27777474 - 27777561
Alignment:
Q  121 tgaagagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgat 208  Q
    ||||||||||||||| ||||||| |||||| ||| | |||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  27777474 tgaagagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 27777561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 27780991 - 27781078
Alignment:
Q  121 tgaagagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgat 208  Q
    ||||||||||||||||||||||| ||||||  || | |||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  27780991 tgaagagaagaagattaatgaaggtgaaacaaaattagggtcaaaagttgtgaagaattttgatttggacgagcttccaagtgatgat 27781078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 27782483 - 27782400
Alignment:
Q  125 gagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgat 208  Q
    ||||||||||| ||||||| |||||| ||| | |||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  27782483 gagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 27782400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 38227289 - 38227211
Alignment:
Q  126 agaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtga 204  Q
    |||||| ||||||||||| |||||||||| | ||||||||||||||||||||| || |||||||||||||| |||||||    
T  38227289 agaagacgattaatgaaggtgaaactgaattagggtcaaaagttgtgaagaatgttgatttgaacgagctttcaagtga 38227211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 17663550 - 17663642
Alignment:
Q  140 gaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgattttgaagatgaatccaattagtgt 232  Q
    |||| |||||| ||| | ||||||| |||||| | ||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  17663550 gaagatgaaaccgaattagggtcaagagttgtcaggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaattagtgt 17663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 38227207 - 38227135
Alignment:
Q  136 taatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgat 208  Q
    |||||||| |||||||||| | |||||||||||||| |||||| || |||||||||||||| |||||||||||    
T  38227207 taatgaaggtgaaactgaattagggtcaaaagttgttaagaatgttgatttgaacgagcttccaagtgatgat 38227135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 38227135 - 38227063
Alignment:
Q  136 taatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgat 208  Q
    |||||||| |||| ||||| | |||||||||| ||||||||||||| |||||||||| ||| |||||||||||    
T  38227135 taatgaaggtgaagctgaattagggtcaaaagatgtgaagaattttgatttgaacgaacttccaagtgatgat 38227063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 17700424 - 17700337
Alignment:
Q  145 tgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgattttgaagatgaatccaattagtgt 232  Q
    |||||| ||| | ||||||| |||||| | |||| || ||||||| |||||| |||||||||||||||||||||||  ||||||||||    
T  17700424 tgaaaccgaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaagtgatgattttgaagatgaaaacaattagtgt 17700337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 21899236 - 21899130
Alignment:
Q  126 agaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgattttgaagatgaatccaa 225  Q
    |||| |||||||  |||| |||||| ||| | ||||||| ||||   | ||||||| ||||||| ||| || ||||||| ||||||||||||||| ||||    
T  21899236 agaaaaagattagcgaaggtgaaaccgaattagggtcaagagtttctatgaattttgatttgaatgagatttcaagtgacgattttgaagatgaaaccaa 21899137  T
Q  226 ttagtgt 232  Q
    |||||||    
T  21899136 ttagtgt 21899130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 38227017 - 38226980
Alignment:
Q  83 gatttgaacgagcttccaagtgatgattttgaagataa 120  Q
    |||||||||||||||||||||||||| |||||||||||    
T  38227017 gatttgaacgagcttccaagtgatgagtttgaagataa 38226980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 118
Target Start/End: Original strand, 17663592 - 17663627
Alignment:
Q  83 gatttgaacgagcttccaagtgatgattttgaagat 118  Q
    |||||||| |||||||||||||||||||||||||||    
T  17663592 gatttgaatgagcttccaagtgatgattttgaagat 17663627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 17700387 - 17700352
Alignment:
Q  83 gatttgaacgagcttccaagtgatgattttgaagat 118  Q
    |||||||| |||||||||||||||||||||||||||    
T  17700387 gatttgaatgagcttccaagtgatgattttgaagat 17700352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 27781080 - 27781117
Alignment:
Q  171 tgaagaatttttatttgaacgagcttgcaagtgatgat 208  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  27781080 tgaagaattttgatttgaacgagcttccaagtgatgat 27781117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 441015 - 440904
Alignment:
Q  121 tgaagagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaatttttatttgaacgagcttgcaagtgatgattttgaagatgaa 220  Q
    ||||||||||| ||||||||||| ||  |||||| | ||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  441015 tgaagagaagatgattaatgaaggtgttactgaattagggccaaaagttgtgaagaattttgatttgaacgagcttccaagtgatgactttgaagatgaa 440916  T
Q  221 tccaattagtgt 232  Q
     | |||||||||    
T  440915 actaattagtgt 440904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 440774 - 440690
Alignment:
Q  265 gaatgatattatggtttttgtgtgggatgaat----acccttgatgttatcatgtaattttccttaattggaagttgtttagtta 345  Q
    ||||||||||||| ||||||||||||||| ||    | ||||||||  |||||||||||||||||| | |||| |||||||||||    
T  440774 gaatgatattatgatttttgtgtgggatggatggatatccttgatgcaatcatgtaattttccttattaggaatttgtttagtta 440690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 440954 - 440919
Alignment:
Q  83 gatttgaacgagcttccaagtgatgattttgaagat 118  Q
    |||||||||||||||||||||||||| |||||||||    
T  440954 gatttgaacgagcttccaagtgatgactttgaagat 440919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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