View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_high_10 (Length: 500)
Name: NF18025_high_10
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 11 - 484
Target Start/End: Complemental strand, 42683917 - 42683444
Alignment:
| Q |
11 |
aagaacgtatccattttgcagcttcttctgaactacgtgctcccaactataaatatatggaatttaaaccatgaatcaatctaatgaaaataaatttcga |
110 |
Q |
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| T |
42683917 |
aagaacgtatccattttgcagcttcttctgaactacgtgctcccaactataaatatatggaatttaaaccatgaatcaatctaatgaaaataaattttga |
42683818 |
T |
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| Q |
111 |
ctaaaaaacttgtttgaatttttagttgtgacaaaccttaagcttatccctttgatttgaagtattacatacagtgaaaataaataatacctgtgaattg |
210 |
Q |
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| T |
42683817 |
ctaaaaaacttgtttgaatttttagttttgacaaaccttaagcttatccctttgatttgaagtattacatacagtgaaaataaataatacctgtgaattg |
42683718 |
T |
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| Q |
211 |
caaacaaatttctaaattcaattaattgctcaaagaaacaaacgccattgaaaattaatgtaatcagaatatcaacatcctaagtttcttacttttttgt |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42683717 |
caaataaatttctaaattcaattaattgctcaaagaaacaaacgccattgaaaattaatgtaatcagaatatcaacatcctaagtttcttacttttttgt |
42683618 |
T |
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| Q |
311 |
taatactctcccttccattgtcagtaacacgaatagtcgagtctatcattgcacttctcattggctcctgaaaattacaatcctttcattcatttatcac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42683617 |
taatactctcccttccattgtcagtaacacgaatagtcgagtctatcattgcacttctcattggctcctgaaaattacaatcctttcattcatttatcac |
42683518 |
T |
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| Q |
411 |
aatcaacaacatgatcatttgcaataatgagaattatgtttaaattttgctcttattgatacattacaacattt |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42683517 |
aatcaacaacatgatcatttgcaataatgagaattatgtttaaattttgctcttattgatacattacaacattt |
42683444 |
T |
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