View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_high_20 (Length: 415)
Name: NF18025_high_20
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 9463407 - 9463022
Alignment:
| Q |
17 |
aaaagaatgaaccttcaatcaacaacactgataatcaagctttgttgaaacaagttgctttgaccgatatgctcggtgattggaaagacggaattcttac |
116 |
Q |
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| T |
9463407 |
aaaagaatgaaccttcaatcaacaacactgataatcaagctttgttgaaacaagttgctttgaccgatatgctcggtgattggaaagacggaattcttac |
9463308 |
T |
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| Q |
117 |
cattggtactcttggctatgatcctttgaaatccatgaacaatcacaaagaatactttgctttggaagctgaaaaacaacatgatttagttgtnnnnnnn |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9463307 |
cattggtactcttggctatgatcctttgaaatccatgaacaatcacaaagaatactttgctttggaagctgaaaaacaacatgatatagttgt---tgat |
9463211 |
T |
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| Q |
217 |
nnnnnnnnnnttgaaaatttctatgatgttgaacaagaggaactgaatccattgatcaacaacacatttgatgagaacaactttgaggttgttatttgtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9463210 |
gatgatgatgttgaaaatttctatgatgttgaacaagaggaactgaatccattgatcaacaatacatttgatgagaacaactttgaggttgttatttgtg |
9463111 |
T |
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| Q |
317 |
aaaaccatgatgtagttgatgatgatgctagaaaagaggaagaaatgattattagaaactttaaggaaattgttgaggtgccacctatg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9463110 |
aaaaccatgatgtagttgatgatgatgctagaaaagaggaagaaatgattattagaaactttaaggaaattgttgaggtgccacctatg |
9463022 |
T |
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