View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_high_35 (Length: 255)
Name: NF18025_high_35
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 54790279 - 54790518
Alignment:
| Q |
1 |
ttgcatcatatatatctctcatgtccatctatctcactgtaatgttgttttcttttatgaaaaacatat--tttatgctcttacccagagatgcttctat |
98 |
Q |
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| T |
54790279 |
ttgcatcatatatatctctcatgtccatctatctcactgtaatgttgttttcttttatgaaaaacatatattttatgctcttatccagagatgcttctat |
54790378 |
T |
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| Q |
99 |
atacccgtcacccgtgtatttggtgtgcttctttgaatttgttctctatcgggcatctgcagatgtttgagacaaattcctccgcaatttaaaatttgtt |
198 |
Q |
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| T |
54790379 |
ataccc-------gtgtatttggtgtgcttctttgaatttgttctctatcgggcatctgcagatgtttgagacaaattcctccgcaatttaaaatttgtt |
54790471 |
T |
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| Q |
199 |
gtttagaatcacaccattccagaaatcaaactgtcgatcacaggttctg |
247 |
Q |
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| T |
54790472 |
gtttagaat--caccattccagaaatcaaactgtcgatcacaagttctg |
54790518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 54778866 - 54778627
Alignment:
| Q |
1 |
ttgcatcatatatatctctcatgtccatctatctcactgtaatgttgttttcttttatgaaaaacatat--tttatgctcttacccagagatgcttctat |
98 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
54778866 |
ttgcatcatatatatctctcatgtccatttatctcactgtaatgttgttttcttttatgaaaaacatatattttatgctcttatccagagatgcttctat |
54778767 |
T |
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| Q |
99 |
atacccgtcacccgtgtatttggtgtgcttctttgaatttgttctctatcgggcatctgcagatgtttgagacaaattcctccgcaatttaaaatttgtt |
198 |
Q |
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| T |
54778766 |
atacccgt-------gtatttggtgtgcttctttgaatttgttctctatcgggcatctgcagatgtttgagacaaattcctccgcaatttaaaatttgtt |
54778674 |
T |
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| Q |
199 |
gtttagaatcacaccattccagaaatcaaactgtcgatcacaggttctg |
247 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
54778673 |
gtttagaat--caccattccagaaatcaaactgtcgatcacaagttctg |
54778627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 52282941 - 52283180
Alignment:
| Q |
1 |
ttgcatcatatatatctctcatgtccatctatctcactgtaatgttgttttcttttatgaaaaacatat--tttatgctcttacccagagatgcttctat |
98 |
Q |
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||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||| | |||||||||||| | |
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| T |
52282941 |
ttgcatcatgtatatctctcatgtctatctatctcactataatgttgttttcttttatgtaaaacatatattttatgcccttatcgagagatgcttcttt |
52283040 |
T |
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| Q |
99 |
atacccgtcacccgtgtatttggtgtgcttctttgaatttgttctctatcgggcatctgcagatgtttgagacaaattcctccgcaatttaaaatttgtt |
198 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52283041 |
atacctgt-------gtatttggtgtgcttctttgaatttgttctctatcgggcatctgcaaatgtttgagacaaattcctccgcaatttaaaatttgtt |
52283133 |
T |
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| Q |
199 |
gtttagaatcacaccattccagaaatcaaactgtcgatcacaggttctg |
247 |
Q |
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||||||||| |||||||||| || ||||| |||| || ||| |||||| |
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| T |
52283134 |
gtttagaat--caccattccaaaagtcaaattgtcaatgacaagttctg |
52283180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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