View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_high_6 (Length: 523)
Name: NF18025_high_6
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 4329427 - 4328940
Alignment:
| Q |
19 |
aacacagcaagaagaagaagctctatttttctgtgtctctgcagcaccaactccaatgatgaacctgataataattcacaacctggaggtgatgttcaaa |
118 |
Q |
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| T |
4329427 |
aacacagcaagaagaagaagctctgtttttctgtgtctctgcagcaccaactccaatgatgaacctgataataattcaaaacctggaggtgatgttcaaa |
4329328 |
T |
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| Q |
119 |
gccaagagctattggctcaacttgcaatgcttgagacagaaaaagttcgtcttacggattatttggatgaaagatctgaatatttgacacagtttggtga |
218 |
Q |
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| T |
4329327 |
gccaagagctactggctcaacttgcaatgcttgagacagaaaaagttcgtcttacggattatttggatgaaagatctgaatatttgacacagtttggtga |
4329228 |
T |
|
| Q |
219 |
agaagctaaagctgaaattgataagattggtgaagatgctcttaaaggattagatgaagctagtgatagagtatgtatgcacttttcactcactctttac |
318 |
Q |
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| T |
4329227 |
agaagctaaagctgaaattgataagattggtgaagatgctcttaaaggattagatgaagctagtgatagagtatgtatgcacttttcactcactatttac |
4329128 |
T |
|
| Q |
319 |
ttgttcaatttgttaaccatgcatagattctagttagctacagagttattcattctagtactttacattccagtaaaccataattcagtttttaaagtat |
418 |
Q |
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| T |
4329127 |
ttgttcaatttgttaaccatgcatacattctagttagctacagagttattcattctagtactttacattccagtaaaccataattctgtttttaaagtat |
4329028 |
T |
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| Q |
419 |
atgaacattacaaataattgttaaagtatgtacaatttatcttgttctctaaagtatatgaaaattcattatgttaatccctagtagg |
506 |
Q |
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| T |
4329027 |
atgaacataacaaataattgttaaagtatgtacaatttatcttgttctctaaagtatatgaaaattcattatgttattccctagtagg |
4328940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 24493345 - 24493236
Alignment:
| Q |
184 |
gatgaaagatctgaatatttgacacagtttggtgaagaagctaaagctgaaattgataagattggtgaagatgctcttaaaggattagatgaagctagtg |
283 |
Q |
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||||| ||||||| ||| || || || ||||||||| |||| || |||| |||| |||||||| |||||||| || |||| ||||||||||||||||| |
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| T |
24493345 |
gatgagagatctgcatacttaactcaatttggtgaaaaagcaaactctgagtttgaaaagattggagaagatgcactcaaagaattagatgaagctagtg |
24493246 |
T |
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| Q |
284 |
atagagtatg |
293 |
Q |
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|||||||| |
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| T |
24493245 |
ccagagtatg |
24493236 |
T |
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