View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_1 (Length: 775)
Name: NF18025_low_1
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 158 - 759
Target Start/End: Original strand, 3435390 - 3435974
Alignment:
| Q |
158 |
atttgtgtgttctaagaaatgaaagtttacttagttttttaataacattnnnnnnntaaaggagccaacttcatttccaaaacgaatctttttacaa-aa |
256 |
Q |
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| T |
3435390 |
atttgtgtgttctaagagatgaaagtttacttagttttttaataacattaaaaaaataaaggagccaacttcatttccaaaacgaatctttttacaacaa |
3435489 |
T |
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| Q |
257 |
cgatttcgtaatatatattttaaatgaaatctcaacattagttatttttgggataataaaaattggattaaagagagtataagagatactattgcgtgga |
356 |
Q |
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| T |
3435490 |
cgatttcgtaatatatattttaaatggaatctcaacattagttatttttgggataataaaaattggattaaagagagtataagagatactattgcatgga |
3435589 |
T |
|
| Q |
357 |
atagtatcttttaattggaatatatattttaaaaatttgaaggaggtgcacggattcgaatttatggagtttctttgcaagcatggaatggaannnnnnn |
456 |
Q |
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| T |
3435590 |
ata---------------aagat-tgtgttaa--atttgaaagaggttcacggattcgaatttacggagtttctttgcaagcatggaatgggaaattttt |
3435671 |
T |
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| Q |
457 |
nagattatgtgcttttgattttggtcgattgttgagggtagataactgcacggttgctagagaatggtttgattatgttcgtattttattggcaacttca |
556 |
Q |
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| T |
3435672 |
tagattatgtgcttttgattttggtcgattgttgagggtagataattgcacggttgctagagaatggtttgattatgttcgtattttattggcaacttca |
3435771 |
T |
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| Q |
557 |
tccctagaggttattaatgacgaagctgatttgttggttgatgatgatttggtgaatattaaaataatggaggaatggggattctcattaggcgaggatg |
656 |
Q |
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| T |
3435772 |
tccctagagattattaatgacgaagctgatttgttggttgatgatgatttggtgaatattaaaataatggaggaatggggattctcattaggcgaggatg |
3435871 |
T |
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| Q |
657 |
cttgtttgtttgaggatgcttcgatttgtgatgaaagtgaaaaagcggaagtacatgttgtttttgttgtgaataatgatgtagaaaatatggtgaatga |
756 |
Q |
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| T |
3435872 |
cttgtttgtttgaggatgcttcgatttgtgatgaaagtgaaaaagcggaagtacatgttgtttttgttgtgaataatgatgtagaaaatatggtgaatga |
3435971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 3435249 - 3435304
Alignment:
| Q |
16 |
catagggggtatggtgaatgcttgtaattggtcacggggatagaaaattaacgaac |
71 |
Q |
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| T |
3435249 |
catagggggtatggtgaatgcttataattggtcacggggatagaaaattaacgaac |
3435304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 458 - 759
Target Start/End: Complemental strand, 17964370 - 17964069
Alignment:
| Q |
458 |
agattatgtgcttttgattttggtcgattgttgagggtagataactgcacggttgctagagaatggtttgattatgttcgtattttattggcaacttcat |
557 |
Q |
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| T |
17964370 |
agattatgtgcttttgattttagtcgaatgttacgggtggatagttgcacggtttatagagaaaggtatgattacgctcgtattttattgccagcttctt |
17964271 |
T |
|
| Q |
558 |
ccctagaggttattaatgacgaagctgatttgttggttgatgatgatttggtgaatattaaaataatggaggaatggggattctcattaggcgaggatgc |
657 |
Q |
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| T |
17964270 |
ccttggaggttataaaagccgacgcagatttgttggttgatgatgctttgatgaatattaaaattgtagaggatttgggttttccgttcggcgaggatgc |
17964171 |
T |
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| Q |
658 |
ttgtttgtttgaggatgcttcgatttgtgatgaaagtgaaaaagcggaagtacatgttgtttttgttgtgaataatgatgtagaaaatatggtgaatgag |
757 |
Q |
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| T |
17964170 |
ttgtttatttgaggatgatccgggttgtggtgataatgaagaagcagaggatcatggtgacttagttgtgaataatgacgtagataatttggtgaatgag |
17964071 |
T |
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| Q |
758 |
at |
759 |
Q |
| |
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|| |
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| T |
17964070 |
at |
17964069 |
T |
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