View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_11 (Length: 503)
Name: NF18025_low_11
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 486
Target Start/End: Original strand, 29770754 - 29771226
Alignment:
| Q |
14 |
caaagggaacacgttagacaaaaatagtgagttataagtccaaatgccatatccaaaaaa-tatagtaagttagcaacatgttcaacttcaacaaggtta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29770754 |
caaagggaacacgttagacaaaaatagtgagttatacgtccaaatgccatatccaaaaaaatatagtaagttagcaacatgttcaacttcaacaaggtta |
29770853 |
T |
|
| Q |
113 |
tgatatgctgatctagctttgtgaccatagttttatcaaaactaacttgcgagcaagttcattaaacttatgagctagcttgtcccgnnnnnnnnnnnnn |
212 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
29770854 |
tgatatgctgatctagctttgtgaccctagttttatcaaa-ctaacttgcgagcaagttcattaaacttatgagctaacctgtccttttttttttttttt |
29770952 |
T |
|
| Q |
213 |
-----aatttaaaatagtttaatcaaacggataggctttgtttgtgataaatagtttaatttaaaaacgacattatagtacttaattaattattatattt |
307 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29770953 |
tttttaatttaaaatagtttaatcaaac--atatgctttgtttgtgataagtagtttactttaaaaacgacattatagtacttaattaattattatattt |
29771050 |
T |
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| Q |
308 |
tgaagaaagtactttattaattaatgtcttgtaatatatctcaagacacataagttttctagattatatatcaaggtgatgtaatacaattgatagaaaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29771051 |
tgaagaaagtactttattaattaatgtcttgtaatatatctcaagacacataagttttctagattatatatcaaggtgatgtaatacaattgatagaaaa |
29771150 |
T |
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| Q |
408 |
cctaattcataactactccattataataaccccattttctcctctgtgatttttctctgcgtgtgatatagatgatttg |
486 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29771151 |
cctaattcataactactccatt---ataaccccattttctcctctgtgatttttctctgcgtgtgatatagatgatttg |
29771226 |
T |
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