View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18025_low_13 (Length: 498)

Name: NF18025_low_13
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18025_low_13
NF18025_low_13
[»] chr8 (21 HSPs)
chr8 (124-315)||(31694994-31695184)
chr8 (19-124)||(31694867-31694970)
chr8 (375-461)||(36776402-36776488)
chr8 (399-464)||(8760723-8760788)
chr8 (376-461)||(24053913-24053998)
chr8 (399-464)||(25836265-25836330)
chr8 (399-464)||(1942811-1942876)
chr8 (393-464)||(40587692-40587763)
chr8 (399-464)||(32844171-32844236)
chr8 (393-461)||(25346050-25346118)
chr8 (393-461)||(42245735-42245803)
chr8 (399-458)||(8162781-8162840)
chr8 (398-461)||(41972977-41973040)
chr8 (377-461)||(18378805-18378889)
chr8 (393-461)||(9472168-9472235)
chr8 (376-435)||(41152667-41152726)
chr8 (175-228)||(31694167-31694220)
chr8 (400-461)||(40616097-40616158)
chr8 (400-461)||(44389008-44389069)
chr8 (411-453)||(45435024-45435066)
chr8 (393-435)||(41534277-41534319)
[»] chr4 (32 HSPs)
chr4 (19-189)||(45534748-45534939)
chr4 (376-463)||(53991552-53991639)
chr4 (376-463)||(35716299-35716386)
chr4 (376-464)||(39406231-39406319)
chr4 (374-464)||(29712366-29712457)
chr4 (387-464)||(578604-578681)
chr4 (376-464)||(24948286-24948374)
chr4 (376-461)||(3821201-3821286)
chr4 (399-464)||(8956938-8957003)
chr4 (399-464)||(8986910-8986975)
chr4 (399-464)||(37349808-37349873)
chr4 (376-461)||(50119960-50120045)
chr4 (376-461)||(51347487-51347572)
chr4 (379-461)||(13171627-13171709)
chr4 (376-461)||(3757725-3757810)
chr4 (392-461)||(30529281-30529350)
chr4 (376-461)||(39716720-39716805)
chr4 (374-461)||(36743204-36743291)
chr4 (376-461)||(20588561-20588646)
chr4 (393-461)||(24547347-24547415)
chr4 (399-458)||(9888895-9888954)
chr4 (376-464)||(43021891-43021979)
chr4 (377-431)||(47560251-47560305)
chr4 (399-464)||(50033703-50033767)
chr4 (393-461)||(17730449-17730517)
chr4 (381-447)||(52799029-52799095)
chr4 (399-447)||(5752473-5752521)
chr4 (381-461)||(15704115-15704195)
chr4 (377-461)||(35498535-35498619)
chr4 (184-228)||(45534033-45534077)
chr4 (400-461)||(16896008-16896069)
chr4 (412-448)||(35833429-35833465)
[»] chr3 (16 HSPs)
chr3 (379-464)||(11955525-11955610)
chr3 (376-457)||(22473643-22473724)
chr3 (376-461)||(29530564-29530649)
chr3 (392-461)||(19368944-19369013)
chr3 (393-464)||(35855220-35855291)
chr3 (379-461)||(26102153-26102235)
chr3 (376-461)||(8528106-8528191)
chr3 (400-461)||(28981820-28981881)
chr3 (376-447)||(22519189-22519259)
chr3 (399-447)||(18682511-18682559)
chr3 (376-447)||(8393562-8393633)
chr3 (377-435)||(33872205-33872263)
chr3 (393-447)||(55297360-55297414)
chr3 (400-461)||(40831929-40831990)
chr3 (377-447)||(19895662-19895732)
chr3 (412-461)||(11602167-11602216)
[»] chr1 (23 HSPs)
chr1 (376-461)||(29844884-29844969)
chr1 (377-464)||(33075656-33075743)
chr1 (376-464)||(22198907-22198995)
chr1 (384-463)||(10766193-10766272)
chr1 (374-464)||(1826790-1826880)
chr1 (377-463)||(42678374-42678460)
chr1 (379-461)||(46626327-46626409)
chr1 (374-447)||(1367288-1367361)
chr1 (376-461)||(19322347-19322432)
chr1 (376-464)||(38894754-38894842)
chr1 (376-461)||(16300388-16300473)
chr1 (376-447)||(4890097-4890168)
chr1 (376-447)||(17364620-17364691)
chr1 (399-458)||(28570747-28570806)
chr1 (376-447)||(29188317-29188388)
chr1 (376-447)||(33359699-33359770)
chr1 (376-461)||(47134703-47134788)
chr1 (376-461)||(52306068-52306153)
chr1 (400-461)||(19400754-19400815)
chr1 (400-461)||(50557850-50557910)
chr1 (376-447)||(10698135-10698206)
chr1 (400-461)||(51971275-51971335)
chr1 (167-203)||(41884211-41884247)
[»] chr2 (15 HSPs)
chr2 (379-463)||(9920910-9920994)
chr2 (379-464)||(17836969-17837054)
chr2 (376-464)||(32677183-32677271)
chr2 (393-461)||(19486205-19486273)
chr2 (374-461)||(10050192-10050279)
chr2 (376-461)||(10876574-10876657)
chr2 (378-447)||(9545792-9545861)
chr2 (379-447)||(2952759-2952827)
chr2 (381-444)||(18096495-18096558)
chr2 (376-447)||(28607220-28607291)
chr2 (377-447)||(4292799-4292869)
chr2 (411-461)||(19486114-19486164)
chr2 (376-461)||(24520865-24520950)
chr2 (393-461)||(42781027-42781095)
chr2 (167-203)||(4058998-4059034)
[»] chr7 (21 HSPs)
chr7 (376-463)||(3791478-3791565)
chr7 (377-464)||(29467751-29467838)
chr7 (375-447)||(39276611-39276683)
chr7 (377-464)||(44804520-44804607)
chr7 (399-464)||(24684633-24684698)
chr7 (377-461)||(39651151-39651235)
chr7 (376-447)||(21600987-21601058)
chr7 (377-447)||(11840464-11840534)
chr7 (377-447)||(21670809-21670879)
chr7 (393-461)||(35156998-35157066)
chr7 (382-461)||(29684116-29684195)
chr7 (379-447)||(17169026-17169094)
chr7 (393-461)||(34872185-34872253)
chr7 (376-447)||(48529950-48530021)
chr7 (375-461)||(27737744-27737830)
chr7 (373-447)||(9143469-9143546)
chr7 (376-447)||(688062-688133)
chr7 (377-461)||(7857012-7857095)
chr7 (412-447)||(4848383-4848418)
chr7 (173-228)||(34853322-34853377)
chr7 (375-447)||(49146139-49146212)
[»] scaffold0385 (1 HSPs)
scaffold0385 (381-463)||(8301-8383)
[»] chr6 (10 HSPs)
chr6 (379-464)||(4897494-4897579)
chr6 (376-447)||(15045563-15045634)
chr6 (375-461)||(9737755-9737841)
chr6 (376-447)||(1218517-1218588)
chr6 (376-447)||(24443926-24443997)
chr6 (376-430)||(18323834-18323888)
chr6 (376-447)||(6969312-6969383)
chr6 (412-461)||(25529276-25529325)
chr6 (411-461)||(33328280-33328330)
chr6 (411-447)||(9981276-9981312)
[»] chr5 (17 HSPs)
chr5 (374-463)||(12592469-12592558)
chr5 (375-458)||(36886974-36887057)
chr5 (399-464)||(6305449-6305514)
chr5 (399-464)||(43138546-43138611)
chr5 (377-447)||(3088048-3088118)
chr5 (376-461)||(30140501-30140586)
chr5 (377-461)||(25698720-25698804)
chr5 (393-461)||(30754425-30754493)
chr5 (375-447)||(41689273-41689345)
chr5 (399-458)||(754450-754509)
chr5 (376-461)||(17643388-17643473)
chr5 (413-461)||(42977835-42977883)
chr5 (377-447)||(33709830-33709900)
chr5 (412-461)||(12422347-12422396)
chr5 (377-436)||(26602196-26602255)
chr5 (376-447)||(34715602-34715666)
chr5 (141-228)||(30002869-30002957)
[»] scaffold0009 (2 HSPs)
scaffold0009 (376-464)||(225434-225522)
scaffold0009 (379-461)||(108549-108631)
[»] scaffold0057 (1 HSPs)
scaffold0057 (376-447)||(20596-20667)
[»] scaffold0381 (1 HSPs)
scaffold0381 (399-458)||(9591-9650)
[»] scaffold0759 (1 HSPs)
scaffold0759 (376-447)||(5908-5979)
[»] scaffold0069 (1 HSPs)
scaffold0069 (376-447)||(11772-11843)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 124 - 315
Target Start/End: Original strand, 31694994 - 31695184
Alignment:
Q  124 atataatgtaagcagatcataataaaatcaatattcctttctaatctaacagttaaaatcaactttcctatggtgggaaaatcttccctctacccaccat 223  Q
    |||||||||| ||| | ||||||||||||||||||||| | ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||    
T  31694994 atataatgtaggcataccataataaaatcaatattcctctttaatctaacagttaaaatcaatttccctatgatgggaaaatcttccctctacccaccat 31695093  T
Q  224 aaatgttaccctttatttatcctactaaaatgaaatagaatgacattaaattactcgtaaattgttttgaacaatattcaattacttcccct 315  Q
    |||||  ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31695094 aaatgccaccctttgtttgtcctactaaaatgaaa-agaatgacattaaattactcgtaaattgttttgaacaatattcaattacttcccct 31695184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 31694867 - 31694970
Alignment:
Q  19 aaacacgaccataaattgagaaaatgaggtgtggatgtttgggatttaatttggggatcagagggagctat--cgagagaggaagagacggtggtaggcc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||   ||||||||||||||||||||||||||    
T  31694867 aaacacgaccataaattgagaaaatgaggtgtggatgtttgggatttaatttggcgatca----gagctatggagagagaggaagagacggtggtaggcc 31694962  T
Q  117 atgataca 124  Q
    ||||||||    
T  31694963 atgataca 31694970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 375 - 461
Target Start/End: Original strand, 36776402 - 36776488
Alignment:
Q  375 catctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||| |||  |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36776402 catctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 36776488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 8760723 - 8760788
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8760723 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 8760788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 24053913 - 24053998
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| |||  |||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  24053913 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggtt 24053998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 25836330 - 25836265
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25836330 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 25836265  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 1942811 - 1942876
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  1942811 aatgtcccatgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttaag 1942876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 393 - 464
Target Start/End: Complemental strand, 40587763 - 40587692
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||| ||||||||  || |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40587763 aaaataaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 40587692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 32844171 - 32844236
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||  ||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  32844171 aatgtcccataaatttaccattttgccccgataaggggcaatttggtaatctacttattggttaag 32844236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 25346050 - 25346118
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||  || ||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  25346050 aaaagaaatgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 25346118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 393 - 461
Target Start/End: Complemental strand, 42245803 - 42245735
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||| | || ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  42245803 aaaagaaatgtcacttgaattcaccattttgcccctataaggggtaatttgataatctacttattggtt 42245735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 458
Target Start/End: Complemental strand, 8162840 - 8162781
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattg 458  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  8162840 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 8162781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 398 - 461
Target Start/End: Original strand, 41972977 - 41973040
Alignment:
Q  398 aaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  41972977 aaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggtt 41973040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 18378889 - 18378805
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||||||||||||||||||  || ||||| ||||||||| |||| ||||| ||||||||||  || |||||||||    
T  18378889 tctatatacttatattaaaagaaatgtcctttgaatttatcattttgcctctattaggggcaatttggtaaattaattattggtt 18378805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 9472168 - 9472235
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||| || | ||||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  9472168 aaaagaaatgtcccttgaaattaccattttgcctctataa-gggcaatttggtaatctacttattggtt 9472235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 41152667 - 41152726
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggg 435  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||| |||||| ||||    
T  41152667 atctatatacttatataaaaagaaatgtcccttgaatttaccattttgtccctatcaggg 41152726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 31694220 - 31694167
Alignment:
Q  175 gttaaaatcaactttcctatggtgggaaaatcttccctctacccaccataaatg 228  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||| ||||||    
T  31694220 gttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatg 31694167  T

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Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 461
Target Start/End: Complemental strand, 40616158 - 40616097
Alignment:
Q  400 atgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||| || |||||||||||||| |||||||| || |||||||||||||||| |||||||    
T  40616158 atgtcccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggtt 40616097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 461
Target Start/End: Complemental strand, 44389069 - 44389008
Alignment:
Q  400 atgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||| || |||||||||||| ||| |||||||||||||||||||||||| | |||||||    
T  44389069 atgtcccttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggtt 44389008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 453
Target Start/End: Original strand, 45435024 - 45435066
Alignment:
Q  411 atttaccattttgcccctataaggggtaatttggtaatctact 453  Q
    |||||||||||||||| ||||||||| ||||||||||||||||    
T  45435024 atttaccattttgcccttataaggggcaatttggtaatctact 45435066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 41534319 - 41534277
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggg 435  Q
    |||| |||||||||||| |||||||||||||| ||||||||||    
T  41534319 aaaataaatgtcccatgaatttaccattttgctcctataaggg 41534277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 45534748 - 45534939
Alignment:
Q  19 aaacacgaccataaattgagaaaatgaggtgtggatgtttgggatttaatttggggatcagagggagctatcgagagaggaagagacggtggtaggccat 118  Q
    |||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||    
T  45534748 aaacacaacaataaattgagaaaatgaggtgtggatgtttgtgatttaatttggggatcagagggagctatggggagaggaagagacggtggcaggccat 45534847  T
Q  119 gatac---------------------atataatgtaagcagatcataataaaatcaatattcctttctaatctaacagttaaaatcaacttt 189  Q
    |||||                     |||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  45534848 gatacactgaaagagaaaggaaaaaaatataatgtaggcagaccataataaaatcaatgttcctctctaatctaacagttaaaatcaacttt 45534939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 376 - 463
Target Start/End: Complemental strand, 53991639 - 53991552
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaa 463  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53991639 atctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggttaa 53991552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 376 - 463
Target Start/End: Complemental strand, 35716386 - 35716299
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaa 463  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  35716386 atctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaatctacttattagttaa 35716299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 376 - 464
Target Start/End: Complemental strand, 39406319 - 39406231
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39406319 atctatatacttatataaaaagaaatgttccttgaatttaccatttagcccctataaggggtaatttggtaatctacttattggttaag 39406231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 374 - 464
Target Start/End: Original strand, 29712366 - 29712457
Alignment:
Q  374 acatctatatacttatattaaaa-gaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||||||||||||||| |||||||||| |  |||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  29712366 acatctatatacttatattaaaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggttaag 29712457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 387 - 464
Target Start/End: Complemental strand, 578681 - 578604
Alignment:
Q  387 tatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  578681 tatattaaaagaaatgtctcattgatttaccattttgcccctataagggacaatttggtaatctacttattggttaag 578604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 376 - 464
Target Start/End: Complemental strand, 24948374 - 24948286
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||||||||||||||| |||||||||||||  || |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||    
T  24948374 atctatatacttatataaaaagaaatgtcctttgaatttaccattttgctcctataaggggcaatttggaaatctacttattggttaag 24948286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 3821286 - 3821201
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||  |||| |||||||    
T  3821286 atctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 3821201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 8956938 - 8957003
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8956938 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 8957003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 8986910 - 8986975
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8986910 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 8986975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 37349808 - 37349873
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37349808 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 37349873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 50120045 - 50119960
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| |||  ||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50120045 atctatatactaataagaaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 50119960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 51347487 - 51347572
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| |||  |||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  51347487 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 51347572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 13171627 - 13171709
Alignment:
Q  379 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||| |||  |||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13171627 tatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 13171709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 3757725 - 3757810
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| |||  ||||||||||| |  || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3757725 atctatatactaataagaaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 3757810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 392 - 461
Target Start/End: Complemental strand, 30529350 - 30529281
Alignment:
Q  392 taaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30529350 taaaagaaatatcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 30529281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 39716805 - 39716720
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||| ||||| ||||||||||  || |||||||||    
T  39716805 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggtt 39716720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 461
Target Start/End: Complemental strand, 36743291 - 36743204
Alignment:
Q  374 acatctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||||| |||  |||||||||||||| |  ||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  36743291 acatctatatactaataagaaaagaaatgtcccttaaatttaccattttgtctctataaggggcaatttggtaatctacttattggtt 36743204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 20588561 - 20588646
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| |||  |||||||||||||| || ||| ||||||||||| |||||||||| |||||||||||| |||||||||||    
T  20588561 atctatatactaataagaaaagaaatgtcccttgaattcaccattttgcctctataaggggcaatttggtaatccacttattggtt 20588646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 24547347 - 24547415
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||| || ||||||||||||| |||||||||||| |||||||||||||| |||||||||    
T  24547347 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggtt 24547415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 458
Target Start/End: Complemental strand, 9888954 - 9888895
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattg 458  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  9888954 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9888895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 464
Target Start/End: Original strand, 43021891 - 43021979
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||| |||  ||||||||||| || || ||||||||| ||||| |||| ||| | |||||||||||||||||||||||||||    
T  43021891 atctatatactaataagaaaagaaatgttccttgaatttaccatcttgcctctattaggtgcaatttggtaatctacttattggttaag 43021979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 47560305 - 47560251
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctata 431  Q
    ||||||||||||||||||||| |||||||| || |||||||||||||||||||||    
T  47560305 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctata 47560251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 50033703 - 50033767
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||| ||| |||||||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  50033703 aatgtcctatgaatttaccattttgcccttataagggc-aatttggtaatctacttattggttaag 50033767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 17730449 - 17730517
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| |  || |||||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  17730449 aaaagaaatgtgctttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggtt 17730517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 447
Target Start/End: Original strand, 52799029 - 52799095
Alignment:
Q  381 tatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||||||||||||||  |  |||||||||||| ||||||| ||||| ||||||||||    
T  52799029 tatacttatattaaaagaaatgtcctttaaatttaccattttacccctattaggggcaatttggtaa 52799095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 5752473 - 5752521
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||| || |||||||||||||||||||||||||| ||||||||||    
T  5752473 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 5752521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 461
Target Start/End: Original strand, 15704115 - 15704195
Alignment:
Q  381 tatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| ||||| ||||| |  |  |||||||||||||||||||||||||| ||||||||||  |||| |||||||    
T  15704115 tatacttatataaaaagtaatgttctttaaatttaccattttgcccctataaggggaaatttggtaaattactaattggtt 15704195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 35498619 - 35498535
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||| |||| |||||||||| ||| || ||||| |||||||||||||||| ||  ||||||||||  |||| |||||||    
T  35498619 tctatatactaatataaaaagaaatggcccttgaatttatcattttgcccctataaaggacaatttggtaaattactaattggtt 35498535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 45534077 - 45534033
Alignment:
Q  184 aactttcctatggtgggaaaatcttccctctacccaccataaatg 228  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||||    
T  45534077 aactttcttatggtgggaaaatcttccccctacccaccctaaatg 45534033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 461
Target Start/End: Original strand, 16896008 - 16896069
Alignment:
Q  400 atgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||| || |||||| ||||||||| |||||||||  ||||||||||||| | |||||||    
T  16896008 atgtcccttgaatttacaattttgcccttataaggggctatttggtaatctattaattggtt 16896069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 448
Target Start/End: Complemental strand, 35833465 - 35833429
Alignment:
Q  412 tttaccattttgcccctataaggggtaatttggtaat 448  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  35833465 tttaccattttgcccctatgaggggcaatttggtaat 35833429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 11955610 - 11955525
Alignment:
Q  379 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11955610 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 11955525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 376 - 457
Target Start/End: Original strand, 22473643 - 22473724
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttatt 457  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22473643 atctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaatctacttatt 22473724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 29530649 - 29530564
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| |||  |||||||||||||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  29530649 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggtt 29530564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 392 - 461
Target Start/End: Complemental strand, 19369013 - 19368944
Alignment:
Q  392 taaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19369013 taaaagaaatgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggtt 19368944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 393 - 464
Target Start/End: Original strand, 35855220 - 35855291
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||||||||||||| |  |||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  35855220 aaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggttaag 35855291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 379 - 461
Target Start/End: Complemental strand, 26102235 - 26102153
Alignment:
Q  379 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||| |||  |||||||||||||  || ||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  26102235 tatatactaataagaaaagaaatgtcctttgaatttaccattttgcccctataagaggtaatttggtaatctgcttattggtt 26102153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 8528191 - 8528106
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| |||  |||||||||||||| || |||||||||| || |||||||||||| ||||||||||| || |||||||||    
T  8528191 atctatatactaataagaaaagaaatgtcccttgaatttaccattctgtccctataaggggcaatttggtaatatatttattggtt 8528106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 461
Target Start/End: Complemental strand, 28981881 - 28981820
Alignment:
Q  400 atgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||| || |||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  28981881 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 28981820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 22519189 - 22519259
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||| ||||||||||| |||||  || |||||||||||||||||||||||||| ||||| ||||    
T  22519189 atctatatacttctattaaaagaa-tgtccattgaatttaccattttgcccctataaggggcaatttagtaa 22519259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 18682511 - 18682559
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||| || |||||||||||||||||||||||||| ||||||||||    
T  18682511 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 18682559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 8393562 - 8393633
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||| |||| |||   |||||||  || |||||||||||||||||||||||||| ||||||||||    
T  8393562 atctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 8393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 33872205 - 33872263
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggg 435  Q
    |||||||||| |||| ||||||||||||| ||| ||||||||||||| ||||| |||||    
T  33872205 tctatatactaatataaaaagaaatgtccgatgaatttaccattttgtccctagaaggg 33872263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 447
Target Start/End: Complemental strand, 55297414 - 55297360
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||  | |||||||||||| ||||||||| ||||||||||||||    
T  55297414 aaaagaaatgtccctcgaatttaccattttacccctataaagggtaatttggtaa 55297360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 461
Target Start/End: Complemental strand, 40831990 - 40831929
Alignment:
Q  400 atgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||| || |||||||||||||| ||||||||||  |||| ||||||||||| |||||||    
T  40831990 atgtcccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggtt 40831929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 19895732 - 19895662
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||||  ||  ||||||||  || |||||||||||||||| ||||| ||| ||||||||||    
T  19895732 tctatatacttatatagaagaaaatgtccattgaatttaccattttgcccttataaagggcaatttggtaa 19895662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 11602216 - 11602167
Alignment:
Q  412 tttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||||||||||||||||| ||||  |||||||| | |||||||    
T  11602216 tttaccattttgcccctataaggggcaattcagtaatctattaattggtt 11602167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 29844969 - 29844884
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29844969 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29844884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 377 - 464
Target Start/End: Complemental strand, 33075743 - 33075656
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33075743 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 33075656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 376 - 464
Target Start/End: Complemental strand, 22198995 - 22198907
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  22198995 atctatatacttatattaaaagaaatgtcccttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttaag 22198907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 384 - 463
Target Start/End: Original strand, 10766193 - 10766272
Alignment:
Q  384 acttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaa 463  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  10766193 acttatattaaaagaaatgtcctatggatttaccattttgcccctataagggtcaatttggtaatctacttattggttaa 10766272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 374 - 464
Target Start/End: Original strand, 1826790 - 1826880
Alignment:
Q  374 acatctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||||||||||||||||||||||| |||||||| || ||||||||||||| | |||||||||| |||||||||||||| ||||||||||||    
T  1826790 acatctatatacttatattaaaagtaatgtcccttgaatttaccattttggctctataaggggcaatttggtaatctatttattggttaag 1826880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 377 - 463
Target Start/End: Original strand, 42678374 - 42678460
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaa 463  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||  |||||||||||| |||||| |||||||||||||||||||    
T  42678374 tctatatacttatataaaaagaaatgtcccatgaatttaccattttatccctataaggggcaatttgataatctacttattggttaa 42678460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 379 - 461
Target Start/End: Complemental strand, 46626409 - 46626327
Alignment:
Q  379 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||| |||  |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46626409 tatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 46626327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 1367288 - 1367361
Alignment:
Q  374 acatctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||||||||||||||  || |||||||||||||||||||| ||||| ||||||||||    
T  1367288 acatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 1367361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 19322432 - 19322347
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| |||  |||| ||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  19322432 atctatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggtt 19322347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 376 - 464
Target Start/End: Original strand, 38894754 - 38894842
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||| |||  |||  ||||||||  || |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38894754 atctatatactaataagaaagtaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 38894842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 16300388 - 16300473
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||||||||||  |||||||| || |||||||||||||| ||||||||||| ||||||||||  |||| |||||||    
T  16300388 atctatatacttatattaaaattaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggtt 16300473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 4890097 - 4890168
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||| |||| ||||| ||||||||||    
T  4890097 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcctctattaggggcaatttggtaa 4890168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 17364691 - 17364620
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||||||||||||||| |||  || |||||||||||||||||||| ||||| ||||||||||    
T  17364691 atctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaa 17364620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 28570747 - 28570806
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattg 458  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  28570747 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 28570806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 29188388 - 29188317
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||| | ||| ||||||||||    
T  29188388 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 29188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 33359699 - 33359770
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||| | ||| ||||||||||    
T  33359699 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 33359770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 47134703 - 47134788
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||||| ||| | |||||||  || |||||||||||||||||||||||||| ||||||||||  |||| |||||||    
T  47134703 atctatatacttatataaaaggtaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 47134788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 52306068 - 52306153
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||||| ||||||||| |||| |  |||||||||||||||||||||||||| |||||| |||  |||| |||||||    
T  52306068 atctatatacttatataaaaagaaatatccctttaatttaccattttgcccctataaggggcaatttgataaattactaattggtt 52306153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 461
Target Start/End: Original strand, 19400754 - 19400815
Alignment:
Q  400 atgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||| || |||||||||||||||| |||||||||||||| ||||||||| | |||||||    
T  19400754 atgtcccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggtt 19400815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 461
Target Start/End: Original strand, 50557850 - 50557910
Alignment:
Q  400 atgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||| ||||||||||||| || ||||||||| |||||||||||||||| |||||||    
T  50557850 atgtcccatgaatttaccattttgtcc-tataaggggcaatttggtaatctactaattggtt 50557910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 10698206 - 10698135
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||| || | || ||||||||||||| ||  ||||||||||||||||||| |||||| | ||||||||    
T  10698206 atctatatgctaacataaaaagaaatgtccaataaatttaccattttgcccctagaaggggcattttggtaa 10698135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 461
Target Start/End: Complemental strand, 51971335 - 51971275
Alignment:
Q  400 atgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||| || | ||||||||||| ||||||||||| ||||||||||||||| | |||||||    
T  51971335 atgtcccttgaagttaccattttgtccctataaggg-taatttggtaatctattaattggtt 51971275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 41884211 - 41884247
Alignment:
Q  167 atctaacagttaaaatcaactttcctatggtgggaaa 203  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  41884211 atctaatagttagaatcaactttcctatggtgggaaa 41884247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 379 - 463
Target Start/End: Complemental strand, 9920994 - 9920910
Alignment:
Q  379 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaa 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9920994 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggttaa 9920910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 17836969 - 17837054
Alignment:
Q  379 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17836969 tatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 17837054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 376 - 464
Target Start/End: Complemental strand, 32677271 - 32677183
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32677271 atctatatacttatattaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 32677183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 19486205 - 19486273
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19486205 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 19486273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 461
Target Start/End: Complemental strand, 10050279 - 10050192
Alignment:
Q  374 acatctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||||||||||||||||||||||||  || |||||||||||||||||||| ||||| |||||| |||  |||| |||||||    
T  10050279 acatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggtt 10050192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 10876657 - 10876574
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| |||  |||||||||||||| || |||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  10876657 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccc--taaggggcaatttggtaatctacttattggtt 10876574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 447
Target Start/End: Complemental strand, 9545861 - 9545792
Alignment:
Q  378 ctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||||||||||  || |||||||||||||||||||| ||||| ||||||||||    
T  9545861 ctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 9545792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 2952759 - 2952827
Alignment:
Q  379 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||| ||||| ||||||||||    
T  2952759 tatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 2952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 18096495 - 18096558
Alignment:
Q  381 tatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttgg 444  Q
    ||||||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||    
T  18096495 tatacttatataaaaagaaatgtcctttgaatttaccattttgcccctataaggggtaatttgg 18096558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 28607220 - 28607291
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||| ||||||||  || ||||||||||||| |||||||||||| ||||||||||    
T  28607220 atctatatacttatattaaaataaatgtccattgaatttaccattttgtccctataaggggcaatttggtaa 28607291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 4292869 - 4292799
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||||||||||||||||||  || |||||||||||||| ||||| | ||| ||||||||||    
T  4292869 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgctcctattaagggcaatttggtaa 4292799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 19486164 - 19486114
Alignment:
Q  411 atttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  19486164 atttatcattttgcccctataaggggcaatttggtaatctacttattggtt 19486114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 24520865 - 24520950
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||||| |||||||||||||| || |||||  |||||||| |||||||| | ||||||||||  |||| |||||||    
T  24520865 atctatatacttatataaaaagaaatgtcccttgaatttataattttgcctctataaggagcaatttggtaaattactaattggtt 24520950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 42781027 - 42781095
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||| || ||||| ||||||| |||| ||||||| |||||||||||||| |||||||||    
T  42781027 aaaagaaatgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaatctatttattggtt 42781095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 4058998 - 4059034
Alignment:
Q  167 atctaacagttaaaatcaactttcctatggtgggaaa 203  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  4058998 atctaatagtcaaaatcaactttcctatggtgggaaa 4059034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 376 - 463
Target Start/End: Original strand, 3791478 - 3791565
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaa 463  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3791478 atctatatacttatattaaaagaaatgtcctatggatttaccattttgcccctataaggggcaatttggtaatctacttattggttaa 3791565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 377 - 464
Target Start/End: Original strand, 29467751 - 29467838
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29467751 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 29467838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 39276611 - 39276683
Alignment:
Q  375 catctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  39276611 catctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaa 39276683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 377 - 464
Target Start/End: Original strand, 44804520 - 44804607
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||||||||| |||  |||||||||||||| || ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  44804520 tctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggttaag 44804607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 24684698 - 24684633
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  24684698 aatgtcccatgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttaag 24684633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 39651235 - 39651151
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||| ||||| ||||||||||  |||| |||||||    
T  39651235 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggtt 39651151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 21601058 - 21600987
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||| |||||||||||||||||  || |||||||||||||||||||||||||| ||||||||||    
T  21601058 atctatatacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 21600987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 11840534 - 11840464
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||| |||||||||||||||||  || |||||||||||||||||||||||||| ||||||||||    
T  11840534 tctatatacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 11840464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 21670879 - 21670809
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||||||||||| || |||||||||||    
T  21670879 tctatatacttatattaaaagaaatgtcccttgaatttactattttgcccctataaaggataatttggtaa 21670809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 393 - 461
Target Start/End: Complemental strand, 35157066 - 35156998
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  35157066 aaaagaaatgtcacttgaatttaccattttgcccctataaggggcaatttggtaatctacttatcggtt 35156998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 461
Target Start/End: Complemental strand, 29684195 - 29684116
Alignment:
Q  382 atacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||| |||| ||||||||||| || || |||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  29684195 atactaatataaaaagaaatgtgccttgaatttaccattttacccctataaggggcaatttggtaatctactaattggtt 29684116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 17169026 - 17169094
Alignment:
Q  379 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||| | ||| ||||||||||    
T  17169026 tatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 17169094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 34872185 - 34872253
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||  || | ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  34872185 aaaagaaatgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggtt 34872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 48530021 - 48529950
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||||||||||||  || | ||||||||||||||||||  |||| ||||||||||    
T  48530021 atctatatacttatattaaaagaaatgtcctttgaaattaccattttgcccctattgggggcaatttggtaa 48529950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 461
Target Start/End: Complemental strand, 27737830 - 27737744
Alignment:
Q  375 catctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||||| ||| |||||||| ||||| || |||||||||||| ||||||||| || |||||||||||  |||| |||||||    
T  27737830 catctatatacttctataaaaagaaaagtcccttgaatttaccattttacccctataaaggataatttggtaaattactaattggtt 27737744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 447
Target Start/End: Original strand, 9143469 - 9143546
Alignment:
Q  373 tacatctatatacttatattaaaagaaatg---tcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||| |||| |||||||||    |||| || |||||||||||||||||||||||||| ||||||||||    
T  9143469 tacatctatatactaatataaaaagaaataatatcccttgaatttaccattttgcccctataaggggcaatttggtaa 9143546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 688062 - 688133
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||| |||| |||   |||||||  || |||||||||||||||||||||||||| ||||||||||    
T  688062 atctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 688133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 7857095 - 7857012
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||| |||  |||||||||||||| || ||||||| |||||   |||||| |||||||||| ||||||| |||||||||    
T  7857095 tctatatactaataagaaaagaaatgtcccttgaatttaccgttttgtttctataa-gggtaatttgataatctatttattggtt 7857012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 447
Target Start/End: Original strand, 4848383 - 4848418
Alignment:
Q  412 tttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4848383 tttaccattttgcccctatgaggggtaatttggtaa 4848418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 34853322 - 34853377
Alignment:
Q  173 cagttaaaatcaactttcctatggtgggaaaatcttccctctacccaccataaatg 228  Q
    |||| |||| ||||||||||||||||||||| ||||||  ||||||||| ||||||    
T  34853322 cagtaaaaagcaactttcctatggtgggaaagtcttcctcctacccaccctaaatg 34853377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 447
Target Start/End: Complemental strand, 49146212 - 49146139
Alignment:
Q  375 catctatatacttatattaaaaga-aatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||| |||| |||||  |||||||  ||  ||||||||||||||||||| ||||| ||||||||||    
T  49146212 catctatatactaatataaaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 49146139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 381 - 463
Target Start/End: Complemental strand, 8383 - 8301
Alignment:
Q  381 tatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaa 463  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8383 tatacttatattaaaagaaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaa 8301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 4897579 - 4897494
Alignment:
Q  379 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  4897579 tatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggttaag 4897494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 15045634 - 15045563
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  15045634 atctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaa 15045563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 375 - 461
Target Start/End: Complemental strand, 9737841 - 9737755
Alignment:
Q  375 catctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||| |||  |||||||||||||| || ||||||||||||| |||||||||||| |||||| ||||||| |||||||||    
T  9737841 catctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggtt 9737755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 1218517 - 1218588
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||| | ||| ||||||||||    
T  1218517 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 1218588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 24443926 - 24443997
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||||||||||||||| |||  || |||||||||||||||||||| ||||| ||||||||||    
T  24443926 atctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaa 24443997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 430
Target Start/End: Original strand, 18323834 - 18323888
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctat 430  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  18323834 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctat 18323888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 6969383 - 6969312
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||| |||| |||   |||||||| || |||||||||||||||||||||||||| ||||||||||    
T  6969383 atctatatactaatataaaagttaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 6969312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 461
Target Start/End: Original strand, 25529276 - 25529325
Alignment:
Q  412 tttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||| ||||||| ||||||||||| |||||||||||||||| |||||||    
T  25529276 tttacgattttgctcctataaggggcaatttggtaatctactaattggtt 25529325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 33328330 - 33328280
Alignment:
Q  411 atttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||| |||| |||||| ||||||||| |||||| |||||||    
T  33328330 atttaccattttgctcctacaaggggcaatttggtagtctactaattggtt 33328280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 9981312 - 9981276
Alignment:
Q  411 atttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  9981312 atttaccattttacccctataaggggcaatttggtaa 9981276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 374 - 463
Target Start/End: Complemental strand, 12592558 - 12592469
Alignment:
Q  374 acatctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaa 463  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||    
T  12592558 acatctatatacttatataaaaagaaatgtcccatgaatttaccagtttacccctataaggggcaatttggtaatctacttattggttaa 12592469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 375 - 458
Target Start/End: Complemental strand, 36887057 - 36886974
Alignment:
Q  375 catctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattg 458  Q
    |||||||||||| |||  |||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||    
T  36887057 catctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattg 36886974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 6305514 - 6305449
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6305514 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 6305449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 43138611 - 43138546
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43138611 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttaag 43138546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 3088118 - 3088048
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||    
T  3088118 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 3088048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 30140501 - 30140586
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||| | ||||||||||||||  |||| |||||||    
T  30140501 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaattggtt 30140586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 25698804 - 25698720
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||||||||||||||||||  || |||||||||||||||||||| ||||| ||||||||||  || |||||||||    
T  25698804 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggtt 25698720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 30754425 - 30754493
Alignment:
Q  393 aaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||  || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30754425 aaaagaaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 30754493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 41689273 - 41689345
Alignment:
Q  375 catctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||| | ||| ||||||||||    
T  41689273 catctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattatgggcaatttggtaa 41689345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 458
Target Start/End: Complemental strand, 754509 - 754450
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattg 458  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  754509 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 754450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 17643473 - 17643388
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||| |||  |||| ||||||||| || ||||| |||||||||| ||||||||| |||||||||||||| |||||||||    
T  17643473 atctatatactaataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaatctatttattggtt 17643388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 461
Target Start/End: Complemental strand, 42977883 - 42977835
Alignment:
Q  413 ttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42977883 ttaccattttgcccctataaggggcaatttggtaatctacttattggtt 42977835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 33709900 - 33709830
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||  |||||||| || |||||||||||| ||||||||| ||| ||||||||||    
T  33709900 tctatatacttatattaaaattaatgtcccttgaatttaccattttacccctataaagggcaatttggtaa 33709830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 12422396 - 12422347
Alignment:
Q  412 tttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  12422396 tttaccattttgcccctataaggggcaatttggtaatctactaattggtt 12422347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 436
Target Start/End: Complemental strand, 26602255 - 26602196
Alignment:
Q  377 tctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataagggg 436  Q
    ||||||||||||||| |||||||||||||| || |||||||||||| ||| |||||||||    
T  26602255 tctatatacttatataaaaagaaatgtcccttgaatttaccattttacccttataagggg 26602196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 34715602 - 34715666
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||| ||||| ||||||||||    
T  34715602 atctatatacttatattaaaagaaatgtcc-------ttaccattttgcccctattaggggcaatttggtaa 34715666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 30002957 - 30002869
Alignment:
Q  141 cataataaaatcaatattcctttctaatctaacagttaaaa-tcaactttcctatggtgggaaaatcttccctctacccaccataaatg 228  Q
    ||||||||||||| ||||||||| |||| |||| || |||  ||||||  ||||||||||||||||||| || || |||||| ||||||    
T  30002957 cataataaaatcagtattcctttttaatttaacggtaaaatgtcaactgacctatggtgggaaaatctttccccttcccaccctaaatg 30002869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 376 - 464
Target Start/End: Original strand, 225434 - 225522
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggttaag 464  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||| ||||||||||  |||| ||||||||||    
T  225434 atctatatacttatattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttaag 225522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 108549 - 108631
Alignment:
Q  379 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattggtt 461  Q
    |||||||| |||  |||||||||||||| || ||||||||||||| ||| |||||||||||||||||||||||| ||||||||    
T  108549 tatatactaataagaaaagaaatgtcccttgaatttaccattttgtccccataaggggtaatttggtaatctacgtattggtt 108631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 20667 - 20596
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||| ||||| ||||||||||    
T  20667 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 20596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 9591 - 9650
Alignment:
Q  399 aatgtcccatggatttaccattttgcccctataaggggtaatttggtaatctacttattg 458  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  9591 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 5979 - 5908
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    ||||||||||| |||| |||   ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  5979 atctatatactaatataaaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 5908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 447
Target Start/End: Original strand, 11772 - 11843
Alignment:
Q  376 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggtaatttggtaa 447  Q
    |||||||||||||||||||||||||||||   || |||||||||||||||  ||| ||||| ||||||||||    
T  11772 atctatatacttatattaaaagaaatgtcatttgaatttaccattttgcctttattaggggcaatttggtaa 11843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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