View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_14 (Length: 483)
Name: NF18025_low_14
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 4709123 - 4708668
Alignment:
| Q |
19 |
catatagccgaggctgcgagcatgaaacagttctccaatattatttagctaattttgctacattgtgaacaaaataacttttttcagcattatcgcccat |
118 |
Q |
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| T |
4709123 |
catatagccgaggctgcgagcatgaaacagttctccaatattatttagctaattttgctacattgtgaacaaaataacttttttcagcattatcgcccat |
4709024 |
T |
|
| Q |
119 |
tctagatcctactgaactaaaatgatttgataaattttccannnnnnnnattttgtgatgaaggttcttggatagagcagcgattatatcttcaagagat |
218 |
Q |
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| T |
4709023 |
tctagatcctactgaactaaaatgatttgataaattttccattttttttattttgtgatgaaggttcttggatagagcagcgattatatcttcaagagat |
4708924 |
T |
|
| Q |
219 |
catgataaccagaaaggcgcctgttccaacacatggcgtctctgtcctgtaagtcaagttgaagaagtgaagtgcatactgagactccttccgatttggc |
318 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4708923 |
catgataaccagaaaggcacctgttccaacccatggcgtctctgtcctgtaagtcaagttgaagaagtgaagtgcatactgagactccttccgatttggc |
4708824 |
T |
|
| Q |
319 |
tctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatgccatgaaaaccactgtttacaatttcagagtacc |
418 |
Q |
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| T |
4708823 |
tctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatgccatgaaaaccactgtttacaatttcagagtacc |
4708724 |
T |
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| Q |
419 |
accagctagcatgtcttgctttgatatcatcagcgtagctgtttttattttcttct |
474 |
Q |
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| T |
4708723 |
accagctagcatgtcttgctttgatatcatcagcgtagctgtttttattttcttct |
4708668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 272 - 474
Target Start/End: Original strand, 40743733 - 40743935
Alignment:
| Q |
272 |
tcaagttgaagaagtgaagtgcatactgagactccttccgatttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtg |
371 |
Q |
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||||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| ||||| ||||| || |||||||| || |||||||| ||||||||| |
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| T |
40743733 |
tcaagttgaagaagtaaaatgcatactaagacttcttccaatttggctttgcacaataatctactcagtagttttcactcagatggcttccctttttgtg |
40743832 |
T |
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| Q |
372 |
gagcaaggtgatgccatgaaaaccactgtttacaatttcagagtaccaccagctagcatgtcttgctttgatatcatcagcgtagctgtttttattttct |
471 |
Q |
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|||||||||| ||| ||||||||||| ||| || ||||| | |||||||||| ||||||||| |||| |||||| |||||||||| | || ||||||| |
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| T |
40743833 |
gagcaaggtgctgcaatgaaaaccacaatttccagtttcaaaataccaccagcaagcatgtctagcttcgatatcctcagcgtagccatcttcattttct |
40743932 |
T |
|
| Q |
472 |
tct |
474 |
Q |
| |
|
||| |
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|
| T |
40743933 |
tct |
40743935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 384
Target Start/End: Original strand, 397423 - 397494
Alignment:
| Q |
313 |
tttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatg |
384 |
Q |
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| T |
397423 |
tttggctgtgcactattatttactctgttgtattcacacaaatggcttctctttttgtcgaacaaggtgatg |
397494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 3803361 - 3803283
Alignment:
| Q |
313 |
tttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatgccatgaa |
391 |
Q |
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||||||| ||||| || || |||||||| || || ||||||||||||||||||||||| || ||||| ||||| ||||| |
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| T |
3803361 |
tttggctatgcactattatttactctgttgtatttacacaaatggcttctctttttgtcgaacaaggcgatgcaatgaa |
3803283 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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