View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_15 (Length: 471)
Name: NF18025_low_15
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 4469934 - 4470388
Alignment:
| Q |
1 |
tataaaaactttgaatttaaacatcatggcaatcaatcactattnnnnnnnntgaattatcaacggaaatttcagacggaaattataaaaccagtcttta |
100 |
Q |
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| T |
4469934 |
tataaaaactttgaaattaaacatcatggcaatcaatcactattaaaaaaaatgaattatcgacggaaatttcagacgaaaaagataaaaccagtcttta |
4470033 |
T |
|
| Q |
101 |
attttgccgttttgacatttagcgacaaaattaaagacaaattttaaatttttcatctgtaatttaatttggtgaataattcaactttttctagtagtgc |
200 |
Q |
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| T |
4470034 |
aatttgccgttttgacatttagcgacaaaattaaagacaaattttaaatttttcatctgtaatttaatttggtgaataattcaactttttctagtagtga |
4470133 |
T |
|
| Q |
201 |
atagaaaatcgaaattgattcatttgttcccttcaattttaatctttctttgtagatctaacaattccatctgttcctgcaagaatagcatacttatcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4470134 |
atagaaaatcgaaattgattcatttgttcccttcaattttaatctttctttgtagatctaacaattccatctgttcctgcaagaatagcatacttatcct |
4470233 |
T |
|
| Q |
301 |
tccttgttaaattggtacattcaaatccaagagtccctccaagaaccctttgaatataatttgcaacttcaattgaagatttccctccactgcaagtcaa |
400 |
Q |
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| T |
4470234 |
tccttgttaaattggtacattcaaatccaagagtccctccaagaaccctttgaatataatttgcaacttcaattgaagatttccctccactgcaagtcaa |
4470333 |
T |
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| Q |
401 |
ttccaaaggcaactgattcaagaaagtgatctcataagttggcataggattcatg |
455 |
Q |
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| T |
4470334 |
ttccaaaggcaactgattcaagaaagtgatctcataagttggcataggattcatg |
4470388 |
T |
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Back To:
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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 267 - 391
Target Start/End: Original strand, 24568269 - 24568393
Alignment:
| Q |
267 |
ccatctgttcctgcaagaatagcatacttatccttccttgttaaattggtacattcaaatccaagagtccctccaagaaccctttgaatataatttgcaa |
366 |
Q |
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|||||||| || ||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
24568269 |
ccatctgtaccagcaagcatagcatacttatctttccttgttaaattagtacactcaaatccaagtgttccagcaagaaccctttgaatataatttgcaa |
24568368 |
T |
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| Q |
367 |
cttcaattgaagatttccctccact |
391 |
Q |
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||||||| | ||||||||||||||| |
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| T |
24568369 |
cttcaatagcagatttccctccact |
24568393 |
T |
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