View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_17 (Length: 442)
Name: NF18025_low_17
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 40506856 - 40507290
Alignment:
| Q |
10 |
agaacctgtgacctaaattattcccgctcattcccgtttagaggaaaccacattttcaaaaaacaatccgcaattcttcttcttcttcctgcgnnnnnnn |
109 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40506856 |
agaaactgtaacctaaattattcccgctcattcccgtttagaagaaaccacattttcaaaaaacaatccgcaattcttcttcttcttccggcgaaaaaaa |
40506955 |
T |
|
| Q |
110 |
nnntgcacatacgccgtctcagactcgacgacgacgatgaagccgccgtcatcgccgccgtcgaagc---------tcatcctctaccacaacctcaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
40506956 |
aa-tgcacatacgccgtctcagactcgacgacgacgatgaagccgccgtcatcgccgccgtcgaagccgtcgaagctcaacctctaccacaacctcaaat |
40507054 |
T |
|
| Q |
201 |
agttccctcggaaccagtcgtactctccgacgatgacgtcatcgacgtctccgatgaccactcccttcccactcctccaccacctc-------------- |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40507055 |
agttccctcggaaccagtcgtactctccgacgatgacgtc---------tccgatgaccactcccttcccactcctccaccacctcctccgccggttcct |
40507145 |
T |
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| Q |
287 |
-------aggattcggattgtcccgtcaacgattttcttcgccgttttggattctgcataaagagagactcgcttgctacttgtcttcgcgaactagggg |
379 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40507146 |
ccacctcaggcttcggattgtcccgtcaacgattttcttcgccgttttggattctgcataaagagagactcgcttgctacttgtattcgcgaactagggg |
40507245 |
T |
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| Q |
380 |
aatcgatgaacggcttccaagggtttgatattgctacaaaggcaa |
424 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40507246 |
aatcgatgaacggcttccaagggtttgatgttgctacaaaggcaa |
40507290 |
T |
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