View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_18 (Length: 430)
Name: NF18025_low_18
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 412
Target Start/End: Complemental strand, 2747696 - 2747295
Alignment:
| Q |
15 |
gattatacttttctggttttaccatattgtctttgactatt------gtagttgattatgccttgtaatttttcatatatatttcagaaatcatttttca |
108 |
Q |
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| T |
2747696 |
gattatacttttctggttttaccatattgtctttgactattaatattgtagttgattatgccttgtaatttttcatttatatttcagaaatcatttttca |
2747597 |
T |
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| Q |
109 |
agcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggtaagatttgtatgttatgtatttgcaattatatatat |
208 |
Q |
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| T |
2747596 |
agcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggtaagatatgtatgttatgtatttgcaattatatatat |
2747497 |
T |
|
| Q |
209 |
gattgaaccatattattaattttgtttttctattttagactcattgtaggggaaatccaaagtttaattttcacaagtacatgatccgtgcacttgaaga |
308 |
Q |
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| T |
2747496 |
gattgaaccatattattaattttgtttttctattttagactcattgtaggggaaatccaaagtttaattttcacaagtacatgatccgtgcacttgaaga |
2747397 |
T |
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| Q |
309 |
tgacttccaaaacgttgttggtattaggtatgtggatatgcaaagtttctataactatcaaaatcttcatcaatcataagcaatataataagtaggccaa |
408 |
Q |
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| T |
2747396 |
tgacttccaaaacgttgttggtattaggtatgtggatatgcaaagtttctataactatcaaaatcttcatcaatcataagca--ataataagtaggccaa |
2747299 |
T |
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| Q |
409 |
attt |
412 |
Q |
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|||| |
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| T |
2747298 |
attt |
2747295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 92 - 340
Target Start/End: Complemental strand, 2755662 - 2755414
Alignment:
| Q |
92 |
tcagaaatcatttttcaagcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggtaagatttgtatgttatgta |
191 |
Q |
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| T |
2755662 |
tcagaaatcatttttcaagcaattttatggatctgtgacaaagttggactatgtgacattaaggcttggtttcattaaggtaagattttagtgtgca-ta |
2755564 |
T |
|
| Q |
192 |
t-ttgcaattat-atatatgattgaaccatattattaattttgtttttctattttagactcattgtaggggaaatccaaagtttaattttcacaagtaca |
289 |
Q |
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| T |
2755563 |
tcttgccattattatatatgattgaatcatattattaattctgtttat-tgttttagactcattgtaggggaaatccgaagtttaattttcacaagtaca |
2755465 |
T |
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| Q |
290 |
tgatccgtgcacttgaagatgacttccaaaacgttgttggtattaggtatg |
340 |
Q |
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| T |
2755464 |
tgaaccgtgcgcttgaagatgatttcaagaaagttgtcggtattaggtatg |
2755414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 281
Target Start/End: Complemental strand, 2372946 - 2372741
Alignment:
| Q |
74 |
taatttttcatatatatttcagaaatcatttttcaagcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggta |
173 |
Q |
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| T |
2372946 |
taattttgcatttttatttcagaaataaattttcaagcaattttatggatctatgacaaagttggactatatggcattaaggcttggtttcattaaggta |
2372847 |
T |
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| Q |
174 |
agatttgtatgt-tatgtatttgcaattatatatatgattgaaccatattattaattttgtttttctattttagactcattgtaggggaaatccaaagtt |
272 |
Q |
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| T |
2372846 |
agattttagtgtgcatatcttgccaatattatctattattgaatcatattattaatgatgattctctatattagactcattgtaggg---attcaaagtt |
2372750 |
T |
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| Q |
273 |
taattttca |
281 |
Q |
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||||||||| |
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| T |
2372749 |
taattttca |
2372741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 55322043 - 55322128
Alignment:
| Q |
90 |
tttcagaaatcatttttcaagcaattttatggatcagtgacaaagttggattatgtgacattaaggcgtggtttcattatggtaag |
175 |
Q |
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|||||| |||| |||||||||||||||||||| || |||||||| | |||||||| |||||||| | ||||||||||| |||||| |
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| T |
55322043 |
tttcagcaatcctttttcaagcaattttatggctctgtgacaaaatcagattatgtcacattaagacttggtttcattacggtaag |
55322128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 55322259 - 55322305
Alignment:
| Q |
265 |
ccaaagtttaattttcacaagtacatgatccgtgcacttgaagatga |
311 |
Q |
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| T |
55322259 |
ccaaagtttaattttcacaagtacatgattcgtgcccttgaagatga |
55322305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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