View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_19 (Length: 426)
Name: NF18025_low_19
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 56436949 - 56436555
Alignment:
| Q |
19 |
aagacaagttaactataataccttctcctcctcctcctccattgttgatcatgagagggatgaaatgtctcaacacattggcagttcctttcaagtttgt |
118 |
Q |
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| T |
56436949 |
aagacaagttaactataataccttctcctcctcc------attgttgatcatgagagggatgaaatgtctcaacacattggcagttcctttcaagtttgt |
56436856 |
T |
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| Q |
119 |
atccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgttgatagtacctgcgctgttcacaataacatcaggtggacccccc |
218 |
Q |
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| T |
56436855 |
atccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgttgatagtacctgcgctgttcacaataacatcaggtggacccccc |
56436756 |
T |
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| Q |
219 |
ttcatctccataacagtgcgagccatctgttgaacgctgtcatcggagctgacgtcaacattgaggaagagatgattatgattatttggaagtaaaagag |
318 |
Q |
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| T |
56436755 |
ttcatctccataacagtgcgagccatctgttgaacgctgtcattggagctgacgtcaacattgaggaagagatgattatgattatttggaagtaaaagag |
56436656 |
T |
|
| Q |
319 |
attgaagagaatcaagcttatcctgagcacgagaacaacctataatggtgtgacctcgattcgccaattcaatagcaagagccctaccaattcctttgct |
418 |
Q |
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| T |
56436655 |
attgaagagaatcaagcttatcctgagcacgagaacaacctataatggtgtgacctcgattcgccaattcaatagcaagagccctaccaattcctttgct |
56436556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 26560723 - 26560811
Alignment:
| Q |
87 |
ctcaacacattggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
175 |
Q |
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| T |
26560723 |
ctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttcagacggaacctcccacatcttgttgttcttgtt |
26560811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 65 - 175
Target Start/End: Original strand, 24890160 - 24890270
Alignment:
| Q |
65 |
gatcatgagagggatgaaatgtctcaacacattggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttg |
164 |
Q |
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|||||| ||||| ||||| || ||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| ||| ||||| ||||||||||| |
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| T |
24890160 |
gatcattagaggaatgaagtgcctcaacacattggcagtacctttcaagttggtatccatcaccgaatcaaactcttcagagggaacctcccacatctta |
24890259 |
T |
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| Q |
165 |
ttgttcttgtt |
175 |
Q |
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| T |
24890260 |
ctgttcttgtt |
24890270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 26562900 - 26562803
Alignment:
| Q |
78 |
atgaaatgtctcaacacattggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
175 |
Q |
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| T |
26562900 |
atgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacctcccacatcttgttgttcttgtt |
26562803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 403
Target Start/End: Original strand, 24890437 - 24890498
Alignment:
| Q |
342 |
tgagcacgagaacaacctataatggtgtgacctcgattcgccaattcaatagcaagagccct |
403 |
Q |
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||| |||||||||| || ||||||||||| || ||||| ||||||||||| ||||||||||| |
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| T |
24890437 |
tgatcacgagaacatccgataatggtgtggccgcgattagccaattcaattgcaagagccct |
24890498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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