View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_20 (Length: 423)
Name: NF18025_low_20
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 15 - 412
Target Start/End: Complemental strand, 8408336 - 8407939
Alignment:
| Q |
15 |
acatacattgtcggtgtcaacatcatcaatgacttcatctatagttgcttcatctcccatttgatattcagccaaagcttgtctaagttcctctcttgtt |
114 |
Q |
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| T |
8408336 |
acatacattgtcggtgtcaacatcatcaatgacttcatctatagttgcttcatctcccatttgatattcagccaaagcttgtctaagttcctctcttgtt |
8408237 |
T |
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| Q |
115 |
acataactgaacagtcacccaaacaaaacttaagataagcaagaatctgagaaatagacgaaaaatctgataatactgaatttttatggaccaaatctgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8408236 |
acataactgaacagtcacccaaacaaaacttaaggtaagcaagaatctgagaaatagacgaaaaatctgataatactgaatttttatggaccaaatctgt |
8408137 |
T |
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| Q |
215 |
cttgattttatcatctgaattacttgttaatcaagcaatgtgtgtcatagttaaggataaagcaaaggaaccaaatactgacccgctgttatccttgtca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8408136 |
cttgattttatcatctgaattacttgttaatcaagcaatgtgtgtcatagttaaggataaagcaaaggaaccaaatactgacccgctgttatccttgtca |
8408037 |
T |
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| Q |
315 |
aagtattgaaaagccttgaacaaattctcttccctctcaagtttatgccggtttattgtggcagtaatgaattcatgatagtcaatagttccattctt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8408036 |
aagtattgaaaagccttgaacaaattctcttccctctcaagtttatgccggtttattgtggcagtaatgaattcatgatagtcaatagttccattctt |
8407939 |
T |
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