View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_22 (Length: 417)
Name: NF18025_low_22
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 25 - 407
Target Start/End: Original strand, 15807356 - 15807738
Alignment:
| Q |
25 |
gcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcat |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807356 |
gcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcat |
15807455 |
T |
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| Q |
125 |
gctattctcagctttcacaagttctgttgagtccttaacgtttttggatccggttacattccatgatggttctagaaaaactcttcctgagggattctgg |
224 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807456 |
gctattctcagctttcccaagttctgttgagtccttaacgtttttggatccggttacattccatgatggttctagaaaaactcttcctgagggattctgg |
15807555 |
T |
|
| Q |
225 |
ttagtataacccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgcaaaatt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807556 |
ttagtataacccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgcaaaatt |
15807655 |
T |
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| Q |
325 |
gacagaaacttcttgtgttaggacctagacaatcatagaacccataaaccgtatcgttataattgctgttgttgctacctatg |
407 |
Q |
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| T |
15807656 |
gacagaaacttcttgtgttaggacctagacaatcatagaacccataaaccgtatcattataattgctgttgttgctacctatg |
15807738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 407
Target Start/End: Original strand, 15793946 - 15794320
Alignment:
| Q |
33 |
ccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcatgctattct |
132 |
Q |
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| T |
15793946 |
ccataccttttctcagtgtcactccaattgaactcacccattgcccaattgggattgccttctgtcgtcacttttcgtatcaaactcatcatgttattct |
15794045 |
T |
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| Q |
133 |
cagctttcacaagttctgttgagtccttaacgtttttggatccggttacattccatgatggttctagaaaaactcttcctgagggattctggttagtata |
232 |
Q |
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||| |||| |||||||||| ||||| |||||| |||| ||||||||||||||||||||||| || || ||||||||| ||||||||||||||||| || |
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| T |
15794046 |
cagatttcgcaagttctgtcgagtctttaacgattttagatccggttacattccatgatggagttacaataactcttcccgagggattctggttagtgta |
15794145 |
T |
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| Q |
233 |
acccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgcaaaattgacagaaa |
332 |
Q |
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|||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| |
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| T |
15794146 |
acccatgatgcataaatcataccatatcatagctgagacactgttgggacaatattttgcaatatctctaacaacagtgttgatacaaaattgacagaaa |
15794245 |
T |
|
| Q |
333 |
cttcttgtgttaggacctagacaatcatagaacccataaaccgtatcgttataattgctgttgttgctacctatg |
407 |
Q |
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|||| |||| | ||| |||||||||||||||||||||||||||| | || |||| ||||||||||| ||||| |
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| T |
15794246 |
cttcctgtgatgtcaccccgacaatcatagaacccataaaccgtatcatgatcattgttgttgttgctaactatg |
15794320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 25 - 407
Target Start/End: Original strand, 15801737 - 15802119
Alignment:
| Q |
25 |
gcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcat |
124 |
Q |
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||||||| ||||||||||| || |||||||||||| |||||||| | ||||||||| | |||| | | |||||||||||||||||||||||||| |||| |
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| T |
15801737 |
gcaccaaaccataccttttctcggtgtcactccaaatgaactcacccgttgcccaaacgggactggattctgtagtcactttgcgtatcaaactcatcat |
15801836 |
T |
|
| Q |
125 |
gctattctcagctttcacaagttctgttgagtccttaacgtttttggatccggttacattccatgatggttctagaaaaactcttcctgagggattctgg |
224 |
Q |
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| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| || || |||| |||||| | ||||||| |
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| T |
15801837 |
gttattctcagctttcccaagttctgttgagtccttaacgtttctggatccggttatattccatgatggtgttacaataacttttcctgtcgtattctgg |
15801936 |
T |
|
| Q |
225 |
ttagtataacccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgcaaaatt |
324 |
Q |
| |
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|| || |||||||||| |||||||||||||||||| | |||||| |||||||| |||||| || || |||||||||| |||||||||||| || ||| |
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| T |
15801937 |
tttgtgtaacccatgacgcatacatcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatc |
15802036 |
T |
|
| Q |
325 |
gacagaaacttcttgtgttaggacctagacaatcatagaacccataaaccgtatcgttataattgctgttgttgctacctatg |
407 |
Q |
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| |||||||||| |||| | |||| ||||| | || ||||||||||| | || | || || ||||||||||||||||||| |
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| T |
15802037 |
ggcagaaacttcctgtgatgtcacctcgacaaccgtataacccataaacattgtcatgatcatcgctgttgttgctacctatg |
15802119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 336
Target Start/End: Original strand, 15815327 - 15815528
Alignment:
| Q |
135 |
gctttcacaagttctgttgagtccttaacgtttttggatccggttacattccatgatggttctagaaaaactcttcctgagggattctggttagtataac |
234 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||||||| |||||||| |||||||||||| | | ||| | ||||||| | ||| |||| || ||||| |
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| T |
15815327 |
gctttctcaagttcagttgagtccttcgtgtttttggttccggttaaattccatgatggggtaacagaaatttttcctgatgtattatggtcagaataac |
15815426 |
T |
|
| Q |
235 |
ccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgcaaaattgacagaaact |
334 |
Q |
| |
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| |||| |||| ||||||||||| ||||||||||| | ||||||||| ||| || || |||||| ||||| |||||| ||||||||||||||||| |
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| T |
15815427 |
cgatgacacatatgtcataccatatcatagccgagacgccattgggacaacattgagcgatcgctctaacagcagcgttgatacaaaattgacagaaact |
15815526 |
T |
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| Q |
335 |
tc |
336 |
Q |
| |
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|| |
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| T |
15815527 |
tc |
15815528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 15700248 - 15700298
Alignment:
| Q |
291 |
gcaatttctctaaaagcagtgttgatgcaaaattgacagaaacttcttgtg |
341 |
Q |
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||||||||| | | |||||||||||| ||||||||||||||||||| |||| |
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| T |
15700248 |
gcaatttctttgacagcagtgttgatacaaaattgacagaaacttcctgtg |
15700298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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