View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_25 (Length: 362)
Name: NF18025_low_25
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 13769213 - 13768879
Alignment:
| Q |
12 |
atgaacgagattagtatctgtagttgtgcaatcgttcattttatcgcctaatcccataataaaactcaacaaattttccctttctagtgacaatcttgca |
111 |
Q |
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| T |
13769213 |
atgaacgagattagtatctgcagttgtgcaatcgttcattttatcgcctaatcccataataaaactcaacaaattttccctttctagtgacaatcttgca |
13769114 |
T |
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| Q |
112 |
ccattgtcaagcaaacttctattctcaatcttgattttttgaagcaaaacatctgagcctcttagcttattttccaagtgatcattcaactgctttattt |
211 |
Q |
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| T |
13769113 |
ccattgtcaagcaaacttctattctcaatcttgattttttgaagcaaaacatctgagcctcttagcttattttccaagtgatcattcaactgctttattt |
13769014 |
T |
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| Q |
212 |
tcaactgttttgcatcaatttccatttcaatatcacatgcaagtagttttaactggctcaaattctcttcctgcaattttagtttattttccatgtcatt |
311 |
Q |
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| T |
13769013 |
tcaactgttttgcatcaatttccatttcaatatcacatgcaagtagttttaactggctcaaattctcttcctgcaattttagtttattttccatgtcatt |
13768914 |
T |
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| Q |
312 |
aatatcatcctcaagttcttctatcattaactttt |
346 |
Q |
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| T |
13768913 |
aatatcatcctcaagttcttctatcattaactttt |
13768879 |
T |
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