View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_29 (Length: 323)
Name: NF18025_low_29
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 14845720 - 14845428
Alignment:
| Q |
15 |
atgaatgtaaaattaagtgaataatgttagcgatgcaattggtaacaaatatagatccaacttacgatcttgattaacattttgtaatattaaagatcat |
114 |
Q |
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| T |
14845720 |
atgaatgtaaaattaagtgaataatgttagcgatgcaattggtaacaaatatagatccaacttacgatctttattcacattttataatactaaagatcat |
14845621 |
T |
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| Q |
115 |
tttaaaatatcgataatccgagggattcttttgatacaatgtacaatttaaaggagcaaatttaatatttactattttcctattatgtataaatatgggc |
214 |
Q |
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| T |
14845620 |
tttaaaatatcgataatccgaggaattcttttgatacaatgtacaatttaaaggaacaaatttaatatttactattttcctattatgtataaatatgggc |
14845521 |
T |
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| Q |
215 |
catgtgagtggtcctttcacaagtataaagagtatatgataacgtatggagcttgattcccactgatcatacgaagacaaaggtggtatatat |
307 |
Q |
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| T |
14845520 |
catgtgagtggtcctttcacaagtataaagagtatatgataacgtatggagcttgattcccactgatcatacgaagacaaaggtggtatatat |
14845428 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 39414831 - 39414778
Alignment:
| Q |
78 |
acgatcttgattaacattttgtaatattaaagatcattttaaaatatcgataat |
131 |
Q |
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| T |
39414831 |
acgaacttgattaacattttataattttaatgatcattttaaaatatcggtaat |
39414778 |
T |
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