View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_3 (Length: 710)
Name: NF18025_low_3
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 685; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 1 - 697
Target Start/End: Original strand, 51112275 - 51112971
Alignment:
| Q |
1 |
tcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctcttctgagtagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112275 |
tcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctcttctgagtagc |
51112374 |
T |
|
| Q |
101 |
accaccagcatagtctttggttttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcacctgcatactctttggtcttttgtgcagca |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51112375 |
accaccagcatagtctttggttttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcacctgcatactctttggttttttgtgcagca |
51112474 |
T |
|
| Q |
201 |
tcacctgcatactctttggacttgtgcgctgcaccagtggcatattctttggctttctgtgcagccttctgagcagcattagtagcatattctttggcct |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51112475 |
tcacctgcatactctttggacttgtgcgctgcaccagtggcatattctttggctttctgtgcagccttctgagcagcatcagtagcatattctttggcct |
51112574 |
T |
|
| Q |
301 |
tctgtgcagcactacctgtgtattctccagccttatgaatagcttcaccggcaaagtctctgttgtcctctgcatcatcatcatcatctgcatagctttc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112575 |
tctgtgcagcactacctgtgtattctccagccttatgaatagcttcaccggcaaagtctctgttgtcctctgcatcatcatcatcatctgcatagctttc |
51112674 |
T |
|
| Q |
401 |
gtcagcagcataatgtttggtcttttcagaagcatcagtggcataatctctgattttcttagaagcatcccaagcatagcctttggttttctcagcagca |
500 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112675 |
gtcagcagcataatgtttggtcttctcagaagcatcagtggcataatctctgattttcttagaagcatcccaagcatagcctttggttttctcagcagca |
51112774 |
T |
|
| Q |
501 |
tcatgggcatggtcactggctttttgagcagtttccttggacttgtgtgcagtttcatctgcatagtgtttggttttgtgtgcagcgtctgaagcatatt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112775 |
tcatgggcatggtcactggctttttgagcagtttccttggacttgtgtgcagtttcatctgcatagtgtttggttttgtgtgcagcgtctgaagcatatt |
51112874 |
T |
|
| Q |
601 |
cagaggctttatcagtggtggtgctgtccttatctttgtctttgaagccaaggccttcggtgattttctctttggcccactcagtccatgtctctgc |
697 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112875 |
cagaggctttatcagtggtggtgctgtccttatctttgtctttgaagccaaggccttcggtgattttctctttggcccactcagtccatgtctctgc |
51112971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 51111890 - 51112096
Alignment:
| Q |
30 |
gcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctcttctgagtagcaccaccagcatagtctttggttttctgtg |
129 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||| | ||||||||| | | || |||| |||| |||| ||||| ||||||| ||| |||| |
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|
| T |
51111890 |
gcagcatcacctgcatagtctttagatttgtatgctgcatcattggcatactctctagtattgtgagcagcatcacctgcataatctttggctttttgtg |
51111989 |
T |
|
| Q |
130 |
cagcatcgcctgcatactctttggtcttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttggacttgtgcgc |
229 |
Q |
| |
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|||| || || ||||| ||||||||||| | || ||||| ||||||||||| | |||||||||||||||||| ||||| ||||||| || |
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| T |
51111990 |
cagcttcaccagcatagtctttggtcttatatg---------ctgca---tctttggtcttctctgcagcatcacctgcatagtctttagacttgtatgc |
51112077 |
T |
|
| Q |
230 |
tgcaccagtggcatattct |
248 |
Q |
| |
|
|||| || ||||||||||| |
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| T |
51112078 |
tgcagcattggcatattct |
51112096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 51112134 - 51112203
Alignment:
| Q |
1 |
tcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatc |
70 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
51112134 |
tcttgtatgctgcatctttggtcttctcggcagcatcaccagcatagtctttagtcttgtatgctgcatc |
51112203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 51112014 - 51112134
Alignment:
| Q |
1 |
tcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctcttctgagtagc |
100 |
Q |
| |
|
|||| |||||||||||||||| | ||| |||||||||||| ||||| ||||||||||||||||||||| || | ||||| ||| | |||| | ||||| |
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| T |
51112014 |
tcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagc |
51112113 |
T |
|
| Q |
101 |
accaccagcatagtctttggt |
121 |
Q |
| |
|
| |||| ||||| |||||||| |
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|
| T |
51112114 |
atcacccgcataatctttggt |
51112134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 51112211 - 51112278
Alignment:
| Q |
123 |
ttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcacctgcatactctttggtctt |
190 |
Q |
| |
|
|||||||||||||| | | |||| |||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
51112211 |
ttctgtgcagcatcacttccataatctttggtcttctctgctgcatcacctgcataatctttggtctt |
51112278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 51112188 - 51112278
Alignment:
| Q |
1 |
tcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctctt |
91 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| |||| ||||| | ||| | |||||||||| |||||| |||||| |||| |
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|
| T |
51112188 |
tcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggtcttctctgctgcatcacctgcataatctttggtctt |
51112278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 51112210 - 51112280
Alignment:
| Q |
155 |
cttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttggacttgt |
225 |
Q |
| |
|
||||| || |||||||| | |||| ||||||||||| | ||| |||||||||||||| ||||||| ||||| |
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|
| T |
51112210 |
cttctgtgcagcatcacttccataatctttggtcttctctgctgcatcacctgcataatctttggtcttgt |
51112280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 51111874 - 51111939
Alignment:
| Q |
179 |
ctctttggtcttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcata |
244 |
Q |
| |
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||||||||| ||||| ||||||||||||||||| ||||| || |||| |||||| || ||||||| |
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| T |
51111874 |
ctctttggttttttgagcagcatcacctgcatagtctttagatttgtatgctgcatcattggcata |
51111939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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