View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18025_low_30 (Length: 306)
Name: NF18025_low_30
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 46108148 - 46108423
Alignment:
| Q |
13 |
cagatatgtaggatatgtaggtacctccgtccaaacaagaggacaatgttgaatattttatgtcttattgttgtggactcgtgcatgcacttcctaggtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46108148 |
cagatatgtaggatatgtaggtacctccgtccaaccaagaggacaatgttgaatattttatgtcttattgttgtggactcgtgcatgcacttcctaggtt |
46108247 |
T |
|
| Q |
113 |
actccatgctctgtcgtatatgtgccgcactcgtcattcttgaggtacgtacaccattctaatttctctgaaaaactaaataaattactcaatatgtttg |
212 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46108248 |
actccatgctctgtcgtttatgtgccgcactcgtcattcttgaggtacgtacaccattctaatttctctgaaaaactaaataaattactcaatatgtttg |
46108347 |
T |
|
| Q |
213 |
tttactgtcattctgagtttataactttgactgtcatcaacccagatacgtaccaagatatctacatacttccttcc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46108348 |
tttactgtcattctgagtttataactttgactg-catcaacccagatacgtaccaagatatctacatacttccttcc |
46108423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 46108057 - 46108127
Alignment:
| Q |
161 |
gtacaccattctaatttctctgaaaaactaaataaattactcaatatgtttgtttactgtcattctgagtt |
231 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
46108057 |
gtacaccattctattttgtctgaaaaactaaataaatcattcaatatgtttgtttactgtcattctgagtt |
46108127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University