View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_34 (Length: 278)
Name: NF18025_low_34
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 54918650 - 54918913
Alignment:
| Q |
1 |
gaaaccaaaaaataccaacactgtttatgtgagactgacagaggaagaaaaatgaaacgcgcttgaggaatgaaacagttttgtggtttattttgacatg |
100 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54918650 |
gaaaccaaaaaataccaacactgtttatgtgacattgacagaggaagaaaaatgaaacgcgcttgagggatgaaacagttttgtggtttattttgacatg |
54918749 |
T |
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| Q |
101 |
aaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaatccttaatgccattttccaaggtatcatcattcaattctcgttgga |
200 |
Q |
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| T |
54918750 |
aaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaatccttaatgccattttccaaggtatcatctttcaattctcattgga |
54918849 |
T |
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| Q |
201 |
aatttgtactcattgaactactatcattttccaatgttaactcaataattgtactcattagact |
264 |
Q |
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| T |
54918850 |
aatttgtactcattgaactactatcattttccaatgctaactcaataattgtactcattagact |
54918913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 54922126 - 54922227
Alignment:
| Q |
153 |
aatccttaatgccattttccaaggtatcatcattcaattctcgttggaaatttgtactcattgaactactatcattttccaatgttaactcaataattgt |
252 |
Q |
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||||||||||| |||||||||| || | |||||||| ||| || ||||||| |||||| ||||||||||||||||||| ||||||| |||||| |
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| T |
54922126 |
aatccttaatgtcattttccaaagtttaatcattcatcactcatttgaaatttactctcattatactactatcattttccaattctaactcacaaattgt |
54922225 |
T |
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| Q |
253 |
ac |
254 |
Q |
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|| |
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| T |
54922226 |
ac |
54922227 |
T |
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